Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G11100.1 | Thale cress | nucleus | 73.9 | 73.9 |
| Bra009119.1-P | Field mustard | nucleus | 67.07 | 66.53 |
| CDX70144 | Canola | cytosol | 65.86 | 65.6 |
| CDX98849 | Canola | cytosol | 69.48 | 56.35 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 52.61 | 51.57 |
| Solyc06g051120.2.1 | Tomato | nucleus | 48.59 | 47.27 |
| PGSC0003DMT400077199 | Potato | cytosol | 47.79 | 43.59 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 41.77 | 39.1 |
| AT3G58630.1 | Thale cress | nucleus | 36.55 | 28.35 |
| AT1G54060.1 | Thale cress | nucleus | 36.14 | 23.5 |
| AT3G14180.1 | Thale cress | nucleus | 37.35 | 20.99 |
| AT3G24490.1 | Thale cress | nucleus | 24.1 | 18.02 |
Protein Annotations
| MapMan:15.5.20 | EntrezGene:830438 | ProteinID:AED90888.1 | ArrayExpress:AT5G05550 | EnsemblPlantsGene:AT5G05550 | RefSeq:AT5G05550 |
| TAIR:AT5G05550 | RefSeq:AT5G05550-TAIR-G | EnsemblPlants:AT5G05550.2 | TAIR:AT5G05550.2 | ncoils:Coil | UniProt:F4K0Q7 |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | RefSeq:NP_850774.1 | PFAM:PF13837 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0025022 | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF35 | UniParc:UPI0000196BCD | SEG:seg | : |
Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:F4K0Q7]
Coordinates
chr5:-:1639000..1640960
Molecular Weight (calculated)
28563.8 Da
IEP (calculated)
9.021
GRAVY (calculated)
-0.949
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASVVWQGKV
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASVVWQGKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.