Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70144 | Canola | cytosol | 72.96 | 89.6 |
| AT5G05550.2 | Thale cress | nucleus | 56.35 | 69.48 |
| CDY36316 | Canola | nucleus | 54.4 | 66.27 |
| CDY00995 | Canola | nucleus | 54.07 | 64.84 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 38.11 | 46.06 |
| Solyc06g051120.2.1 | Tomato | nucleus | 37.13 | 44.53 |
| PGSC0003DMT400077199 | Potato | cytosol | 37.78 | 42.49 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 34.85 | 40.23 |
| CDX71939 | Canola | nucleus, plastid | 30.94 | 31.56 |
| CDX67755 | Canola | nucleus | 31.92 | 31.01 |
| CDX98311 | Canola | nucleus | 30.94 | 30.45 |
| CDY02487 | Canola | nucleus, plastid | 28.01 | 27.92 |
| CDY33246 | Canola | nucleus | 27.69 | 27.78 |
| CDY61477 | Canola | nucleus, plastid | 27.04 | 27.57 |
| CDY39101 | Canola | nucleus, plastid | 26.06 | 26.23 |
| CDY08216 | Canola | nucleus | 28.01 | 26.22 |
| CDY39099 | Canola | nucleus | 26.71 | 25.87 |
| CDX75751 | Canola | nucleus | 30.94 | 25.54 |
| CDY26148 | Canola | nucleus, plastid | 28.01 | 24.09 |
| CDY51405 | Canola | nucleus | 9.77 | 23.62 |
| CDX93016 | Canola | nucleus | 13.36 | 20.71 |
| CDY33093 | Canola | cytosol, plastid | 27.36 | 19.22 |
| CDX94808 | Canola | nucleus | 19.54 | 18.69 |
Protein Annotations
| EnsemblPlants:CDX98849 | EnsemblPlantsGene:GSBRNA2T00106950001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF35 | PFAM:PF13837 |
| ProteinID:CDX98849 | ProteinID:CDX98849.1 | SEG:seg | UniParc:UPI0004EE4A33 | MapMan:15.5.20 | : |
Description
BnaC09g49860D
Coordinates
chrLK031907:-:265129..266897
Molecular Weight (calculated)
35206.2 Da
IEP (calculated)
8.422
GRAVY (calculated)
-0.803
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: METTTPPPPP AKPQQPHSTV SHRQPTAGRE DWWTEDATAT LLQAWGHRFV RLDFGNLRQN DWKEVADAVN SSHCNGRPKT DTQCKSRIDT LKKKYKAEKA
101: KLSPSAWRFF DRLDVLIGPV SKKPAEEVVK SEALKPYLSL TGTKYRESSL EDDDEEEEDG DWGFVARKHP RVEEGDLSEE TACKELARTI VKLGEVYERI
201: EGRKQKMMVE LEKQRMEVVK EIELQRMNML MEMQLELEKS KNRKRGDGSG KSITPCLCVL SLISKSRCNL CENVMFCNQT SCRARGLQLG NNFVFKCLKQ
301: PKVHCCR
101: KLSPSAWRFF DRLDVLIGPV SKKPAEEVVK SEALKPYLSL TGTKYRESSL EDDDEEEEDG DWGFVARKHP RVEEGDLSEE TACKELARTI VKLGEVYERI
201: EGRKQKMMVE LEKQRMEVVK EIELQRMNML MEMQLELEKS KNRKRGDGSG KSITPCLCVL SLISKSRCNL CENVMFCNQT SCRARGLQLG NNFVFKCLKQ
301: PKVHCCR
001: METTTPQSKS SVSHRPPLGR EDWWSEEATA TLVEAWGNRY VKLNHGNLRQ NDWKDVADAV NSRHGDNSRK KTDLQCKNRV DTLKKKYKTE KAKLSPSTWR
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKQL
101: FYNRLDVLIG PVVKKSAGGV VKSAPFKNHL NPTGSNSTGS SLEDDDEDDD EVGDWEFVAR KHPRVEEVDL SEGSTCRELA TAILKFGEVY ERIEGKKQQM
201: MIELEKQRME VTKEVELKRM NMLMEMQLEI EKSKHRKRAS ASGKQL
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:F4K0Q7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.