Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11100.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT3G11100.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034165.1-P | Field mustard | nucleus | 96.83 | 88.41 |
| CDY00995 | Canola | nucleus | 83.73 | 82.42 |
| AT3G11100.1 | Thale cress | nucleus | 80.56 | 81.53 |
| CDX70144 | Canola | cytosol | 61.9 | 62.4 |
| CDX98849 | Canola | cytosol | 66.27 | 54.4 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 52.38 | 51.97 |
| Solyc06g051120.2.1 | Tomato | nucleus | 46.83 | 46.09 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 46.43 | 43.98 |
| PGSC0003DMT400077199 | Potato | cytosol | 46.03 | 42.49 |
| CDX71939 | Canola | nucleus, plastid | 38.89 | 32.56 |
| CDY33246 | Canola | nucleus | 38.89 | 32.03 |
| CDX98311 | Canola | nucleus | 38.1 | 30.77 |
| CDY39101 | Canola | nucleus, plastid | 36.51 | 30.16 |
| CDX67755 | Canola | nucleus | 37.7 | 30.06 |
| CDY61477 | Canola | nucleus, plastid | 35.71 | 29.9 |
| CDY39099 | Canola | nucleus | 36.9 | 29.34 |
| CDY02487 | Canola | nucleus, plastid | 35.71 | 29.22 |
| CDY51405 | Canola | nucleus | 14.68 | 29.13 |
| CDY08216 | Canola | nucleus | 35.71 | 27.44 |
| CDX75751 | Canola | nucleus | 40.48 | 27.42 |
| CDY26148 | Canola | nucleus, plastid | 36.11 | 25.49 |
| CDX93016 | Canola | nucleus | 19.44 | 24.75 |
| CDY33093 | Canola | cytosol, plastid | 36.51 | 21.05 |
| CDX94808 | Canola | nucleus | 25.4 | 19.94 |
Protein Annotations
| EnsemblPlants:CDY36316 | EnsemblPlantsGene:GSBRNA2T00060293001 | InterPro:IPR006578 | InterPro:MADF-dom | ncoils:Coil | PANTHER:PTHR31307 |
| PANTHER:PTHR31307:SF35 | PFAM:PF13837 | ProteinID:CDY36316 | ProteinID:CDY36316.1 | SEG:seg | SMART:SM00595 |
| UniParc:UPI0004EF1E57 | UniProt:A0A078HEW5 | MapMan:15.5.20 | : | : | : |
Description
BnaA01g31020DBnaA01g31020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEW5]
Coordinates
chrLK032372:-:316948..318159
Molecular Weight (calculated)
28451.5 Da
IEP (calculated)
6.689
GRAVY (calculated)
-0.926
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: METTPETQSK SHPHRLPPGR EDWWSEDATA TLIEAWGDRY VNLSRGNLRQ NDWREVADAV NSIHGGGGRP KTDVQCKNRI DTLKKKYKTE KAKPSPSSWC
101: FFERLDFLIG PVAAKKSTGV VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGDWGFV VRKHRRVEEV DPSGGEGSSC RELARAILKL GEVYERMEGA
201: KQRMMVELEK ERMEAAKELE LQRMNMLMDM QMELERSKLG KRRAVAASGK KL
101: FFERLDFLIG PVAAKKSTGV VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGDWGFV VRKHRRVEEV DPSGGEGSSC RELARAILKL GEVYERMEGA
201: KQRMMVELEK ERMEAAKELE LQRMNMLMDM QMELERSKLG KRRAVAASGK KL
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.