Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G11100.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36316 | Canola | nucleus | 88.41 | 96.83 |
| Bra034866.1-P | Field mustard | nucleus | 76.81 | 81.23 |
| AT3G11100.1 | Thale cress | nucleus | 72.1 | 79.92 |
| Bra009119.1-P | Field mustard | nucleus | 56.52 | 62.15 |
| VIT_08s0058g00200.t01 | Wine grape | nucleus | 47.1 | 51.18 |
| Solyc06g051120.2.1 | Tomato | nucleus | 43.12 | 46.48 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 42.03 | 43.61 |
| PGSC0003DMT400077199 | Potato | cytosol | 42.39 | 42.86 |
| Bra007407.1-P | Field mustard | nucleus, plastid | 36.96 | 34.81 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 34.78 | 31.89 |
| Bra003346.1-P | Field mustard | nucleus | 34.78 | 31.37 |
| Bra021536.1-P | Field mustard | nucleus | 32.25 | 29.09 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 31.52 | 28.06 |
| Bra030909.1-P | Field mustard | nucleus | 12.68 | 27.34 |
| Bra014370.1-P | Field mustard | nucleus | 32.61 | 26.87 |
| Bra001951.1-P | Field mustard | nucleus | 23.91 | 19.47 |
Protein Annotations
Description
AT3G11100 (E=3e-093) | transcription factor
Coordinates
chrA01:+:27120508..27121338
Molecular Weight (calculated)
31106.8 Da
IEP (calculated)
6.375
GRAVY (calculated)
-0.743
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: METTPETQSK SHPHRLPPGR EDWWSEDATA TLIEAWGDRY INLSRGNLRQ NDWREVADAV NSIHGGSGRP KTDVQCKNRI DTLKKKYKTE KAKPSPSSWC
101: FFERLDFLIG PVAAKKSTGV VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGEWGFV VRKHRRVEEV DPSGGEGSSC RELARAILKL GEVYERMEGA
201: KQRMMVELEK QRMEAAKELE LQRMNMLMDM QMELERSKLG KCRAAAASGK DINFLLSLLS NCVNMVKFSF LCACKD
101: FFERLDFLIG PVAAKKSTGV VTPALKNHTL NQTGSKSSGS SLDDDDDDDD DDEVGEWGFV VRKHRRVEEV DPSGGEGSSC RELARAILKL GEVYERMEGA
201: KQRMMVELEK QRMEAAKELE LQRMNMLMDM QMELERSKLG KCRAAAASGK DINFLLSLLS NCVNMVKFSF LCACKD
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.