Factsheet for Bra001951.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94808	Canola	nucleus	91.74	96.88
AT3G24490.1	Thale cress	nucleus	78.17	79.58
KRH48419	Soybean	nucleus	50.44	47.5
PGSC0003DMT400070593	Potato	nucleus	46.31	44.6
Solyc05g018350.2.1	Tomato	nucleus	45.43	43.63
KRH39263	Soybean	nucleus	50.44	43.07
VIT_11s0016g04130.t01	Wine grape	nucleus	43.95	40.71
GSMUA_Achr8P04010_001	Banana	nucleus	34.51	33.52
GSMUA_Achr8P26150_001	Banana	nucleus	30.97	30.0
Os01t0718900-01	Rice	nucleus	26.55	27.95
TraesCS3B01G274700.1	Wheat	nucleus, plastid	24.48	26.6
TraesCS3A01G245400.1	Wheat	nucleus, plastid	24.48	26.43
TraesCS3D01G246100.1	Wheat	nucleus, plastid	23.6	25.32
Bra034866.1-P	Field mustard	nucleus	18.88	24.52
Bra030909.1-P	Field mustard	nucleus	9.14	24.22
OQU87430	Sorghum	nucleus, plastid	24.78	23.93
Bra034165.1-P	Field mustard	nucleus	19.47	23.91
Bra009119.1-P	Field mustard	nucleus	17.11	23.11
Bra037960.1-P	Field mustard	nucleus, plastid	20.06	22.59
Bra003346.1-P	Field mustard	nucleus	19.47	21.57
Zm00001d011730_P001	Maize	nucleus, plastid	22.12	21.43
Bra007407.1-P	Field mustard	nucleus, plastid	18.29	21.16
Bra014370.1-P	Field mustard	nucleus	20.35	20.6
Bra021536.1-P	Field mustard	nucleus	18.29	20.26
Bra021534.1-P	Field mustard	nucleus, plastid	16.81	18.39

Protein Annotations

EnsemblPlants:Bra001951.1	EnsemblPlants:Bra001951.1-P	EnsemblPlantsGene:Bra001951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0043565	ncoils:Coil	PANTHER:PTHR31307	PANTHER:PTHR31307:SF8	PFAM:PF13837
SEG:seg	UniParc:UPI000254081B	UniProt:M4CCM1	MapMan:15.5.20	:	:

Description

AT3G24490 (E=6e-110) | transcription factor

Coordinates

chrA03:+:19567637..19568656

Molecular Weight (calculated)

39222.1 Da

IEP (calculated)

4.487

GRAVY (calculated)

-1.277

Length

339 amino acids

Sequence
(BLAST)

001: MGDSEDETGY PKKFYPLNRQ THPMYTRPIP KRHAYYHEEE DEEEDQEDDV GVGGVGGGGG YSHRERFQKR LKPTKPVPGY DFGSGPSETK AEQEAFVVLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RSERSETQCR RMVDNLKRKY KKERVKVDKL GLGSSKWSFF NKMDMLLGGG GSSAKPEFGL ACGVDSGEFV
201: FMNTKVYLEK SNGFDEMMDS PGDSEEDDDE EEEVEYERRR KKGDDAASYK LLAESVERFG KVYEKMERSK KEQMKELEKM RGEFQRDLEL QKKQIVERAQ
301: SEIARLREEE EENETHHDDD GGESEDEGME NDSDVNLSD

Best Arabidopsis Sequence Match ( AT3G24490.1 )
(BLAST)

001: MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE DPQGGYIRGN ERFQKRQKPN KVVSGFEFAG PSDAKVAYDW REQEAFVLLE
101: VWGDRFLQLG RRSLRNEDWN EVAEKVSEEL RMEKSETQCR RMIDDLKRKY RKEKIKVEKS GLGSSKWSFF NKLDMLLCVS PKSDLGLACG VDSGEFVFMN
201: TKVYLDKSNG FDEMMDSPGD SEEEEDEDDE VEYERKKVND AASYKMLADS VERFGKVYEK MEKSKKEQMK ELEKMRADFQ RDLELQKKQI VDRAQSEIAR
301: LREEEENHHG GGDDDESEDE EMENDSDVNL SDE

Arabidopsis Description

Alcohol dehydrogenase transcription factor Myb/SANT-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LV59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.