Factsheet for Bra034866.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11100.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00995	Canola	nucleus	91.19	92.97
AT3G11100.1	Thale cress	nucleus	76.63	80.32
Bra034165.1-P	Field mustard	nucleus	81.23	76.81
Bra009119.1-P	Field mustard	nucleus	60.54	62.95
VIT_08s0058g00200.t01	Wine grape	nucleus	52.49	53.94
Solyc06g051120.2.1	Tomato	nucleus	45.59	46.48
GSMUA_Achr9P04510_001	Banana	nucleus	44.44	43.61
PGSC0003DMT400077199	Potato	cytosol	44.83	42.86
Bra007407.1-P	Field mustard	nucleus, plastid	39.85	35.49
Bra003346.1-P	Field mustard	nucleus	38.7	33.01
Bra037960.1-P	Field mustard	nucleus, plastid	35.25	30.56
Bra021536.1-P	Field mustard	nucleus	35.25	30.07
Bra021534.1-P	Field mustard	nucleus, plastid	34.87	29.35
Bra014370.1-P	Field mustard	nucleus	35.63	27.76
Bra030909.1-P	Field mustard	nucleus	13.03	26.56
Bra001951.1-P	Field mustard	nucleus	24.52	18.88

Protein Annotations

EnsemblPlants:Bra034866.1	EnsemblPlants:Bra034866.1-P	EnsemblPlantsGene:Bra034866	InterPro:IPR006578	InterPro:MADF-dom	ncoils:Coil
PANTHER:PTHR31307	PANTHER:PTHR31307:SF35	PFAM:PF13837	SEG:seg	SMART:SM00595	UniParc:UPI000254774E
UniProt:M4F1C0	MapMan:15.5.20	:	:	:	:

Description

AT3G11100 (E=4e-088) | transcription factor

Coordinates

chrA05:+:21801828..21802784

Molecular Weight (calculated)

29083.2 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.893

Length

261 amino acids

Sequence
(BLAST)

001: MDTTPETQSK SGGSSRLPPG REDWWSEDAT ATLIEAWGDR YVHLSRGNLR QNDWKEVADA VNSRHGNNGR PKTDVQCKNR IDTLKKKYKT EKAKPSPSSW
101: CFFDKLDFLI GPVALKKSTA AGPAGVFKSP STKAGLKLNQ AGSISSGSSL DDDDDDDDDD VEGDWGFVAR KHRRVEDEDL CPDPGEGSSC RELARAILKL
201: GEVYERIESA KQGMMIELEK QRMEAAKEIE LQRMNMLMDM QMELEKSKLG KRRAAASGKK L

Best Arabidopsis Sequence Match ( AT3G11100.1 )
(BLAST)

001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL

Arabidopsis Description

AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.