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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001302.1-P
Bra007146.1-P
Bra009050.1-P
Bra014771.1-P
Bra024434.1-P
Bra029720.1-P
Bra029780.1-P
Bra034075.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G14180.1 Bra029720.1-P AT3G08780.1 21798944
AT3G14180.1 Bra001302.1-P AT3G09630.1 21798944
AT3G14180.1 Bra029780.1-P AT3G09630.1 21798944
AT3G14180.1 Bra034075.1-P AT3G09630.1 21798944
AT3G14180.1 Bra007146.1-P AT3G55150.1 21798944
AT3G14180.1 Bra014771.1-P AT3G55150.1 21798944
AT3G14180.1 Bra009050.1-P AT5G10210.1 21798944
AT3G14180.1 Bra024434.1-P AT5G67620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39101 Canola nucleus, plastid 99.02 99.34
Bra021534.1-P Field mustard nucleus, plastid 77.78 76.77
AT3G14180.1 Thale cress nucleus 70.26 48.53
VIT_09s0002g00720.t01 Wine grape nucleus 49.02 41.21
KRH06239 Soybean nucleus 49.67 41.08
KRH47662 Soybean nucleus, plastid 49.02 40.76
PGSC0003DMT400088401 Potato nucleus, plastid 48.69 39.95
Solyc03g122030.1.1 Tomato nucleus 47.06 39.67
Bra014370.1-P Field mustard nucleus 41.5 37.91
Bra037960.1-P Field mustard nucleus, plastid 36.6 37.21
Bra034866.1-P Field mustard nucleus 30.07 35.25
Bra034165.1-P Field mustard nucleus 29.09 32.25
GSMUA_Achr8P23650_001 Banana nucleus 35.29 31.67
Bra030909.1-P Field mustard nucleus 12.75 30.47
GSMUA_Achr9P14340_001 Banana nucleus 35.95 30.39
Bra007407.1-P Field mustard nucleus, plastid 29.09 30.38
Bra009119.1-P Field mustard nucleus 24.18 29.48
Bra003346.1-P Field mustard nucleus 29.09 29.09
Zm00001d003549_P001 Maize nucleus 35.95 28.57
TraesCS2D01G311800.1 Wheat nucleus, plastid 37.58 27.84
Zm00001d025514_P001 Maize nucleus 35.62 27.81
EES12241 Sorghum nucleus 36.93 27.7
TraesCS2A01G313300.1 Wheat nucleus, plastid 37.58 27.64
TraesCS2B01G332100.1 Wheat nucleus, plastid 37.58 27.64
Os04t0445600-00 Rice nucleus 37.58 27.58
GSMUA_Achr3P05880_001 Banana nucleus 35.62 26.98
TraesCS6A01G198600.1 Wheat nucleus, plastid 32.35 26.76
Zm00001d016876_P001 Maize nucleus, plastid 33.66 25.62
Os02t0565000-01 Rice nucleus 34.97 25.54
HORVU6Hr1G050140.1 Barley nucleus, plastid 33.66 24.64
TraesCS6D01G184500.2 Wheat nucleus 33.01 24.28
TraesCS6B01G230000.1 Wheat nucleus 32.68 24.04
KXG30464 Sorghum nucleus, plastid 33.01 23.93
Zm00001d010753_P001 Maize nucleus 24.18 22.56
HORVU2Hr1G077940.1 Barley cytosol, nucleus, plastid 13.73 18.75
Bra001951.1-P Field mustard nucleus 20.26 18.29
Zm00001d042917_P001 Maize golgi, plasma membrane 27.12 12.5
Protein Annotations
EnsemblPlants:Bra021536.1EnsemblPlants:Bra021536.1-PEnsemblPlantsGene:Bra021536PANTHER:PTHR31307PFAM:PF13837SEG:seg
UniParc:UPI0002544384UniProt:M4DYE0MapMan:15.5.20:::
Description
AT3G14180 (E=8e-052) | transcription factor
Coordinates
chrA01:+:24692965..24693885
Molecular Weight (calculated)
34574.7 Da
IEP (calculated)
9.959
GRAVY (calculated)
-1.023
Length
306 amino acids
Sequence
(BLAST)
001: MADDDDDQIR SHSDSPDPSS SSPPPPGKFT VTVASPAPPR QKDPDASPLA LLPIKSSGGG GREDCWSERG TGVLIDAWGK IHLELSRGNL KQKHWEEVAE
101: TVRRKAEDNG KTPKTDVQCK NRMDTVKKKY KQEKLTRGRS SSWVFFDKLD RLIGSTAKIS SPPPPRGLLK IPMGKSWNLY HRQGEAETPR FGDKARVKAA
201: SKSWFDSDSE SEATMSEDSG DRLPPPPLSK RKQGGGNTWR EVSSAIMRFG EAYEQIENAK LRQVAEMEKE RLRFFKEVEM QRMQFFVKIQ FELSQLKQQR
301: EENGKQ
Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
Arabidopsis Description
ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.