Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P23650_001 | Banana | nucleus | 68.23 | 72.43 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 71.55 | 64.11 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 30.94 | 45.34 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 31.77 | 44.23 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 30.39 | 43.65 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 32.32 | 43.33 |
| GSMUA_Achr9P04510_001 | Banana | nucleus | 31.22 | 42.48 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 29.83 | 42.35 |
| CDY33246 | Canola | nucleus | 33.15 | 39.22 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 38.95 | 38.74 |
| KRH47662 | Soybean | nucleus, plastid | 39.23 | 38.59 |
| KRH06239 | Soybean | nucleus | 38.4 | 37.57 |
| CDY39099 | Canola | nucleus | 32.04 | 36.59 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 31.22 | 36.45 |
| CDY39101 | Canola | nucleus, plastid | 30.39 | 36.07 |
| Bra021536.1-P | Field mustard | nucleus | 30.39 | 35.95 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 29.83 | 35.88 |
| Solyc03g122030.1.1 | Tomato | nucleus | 35.91 | 35.81 |
| CDY61477 | Canola | nucleus, plastid | 29.56 | 35.55 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 36.46 | 35.39 |
| CDX75751 | Canola | nucleus | 35.64 | 34.68 |
| CDY02487 | Canola | nucleus, plastid | 29.01 | 34.09 |
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 34.53 | 33.78 |
| EES12241 | Sorghum | nucleus | 37.57 | 33.33 |
| Zm00001d003549_P001 | Maize | nucleus | 35.08 | 32.99 |
| Zm00001d025514_P001 | Maize | nucleus | 35.36 | 32.65 |
| Bra014370.1-P | Field mustard | nucleus | 30.11 | 32.54 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 37.02 | 32.45 |
| CDY08216 | Canola | nucleus | 29.28 | 32.32 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 37.02 | 32.21 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 37.02 | 32.21 |
| Os04t0445600-00 | Rice | nucleus | 37.02 | 32.13 |
| Os02t0565000-01 | Rice | nucleus | 36.46 | 31.5 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 34.81 | 31.34 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 35.64 | 31.01 |
| CDY51405 | Canola | nucleus | 10.77 | 30.71 |
| TraesCS6D01G184500.2 | Wheat | nucleus | 35.08 | 30.53 |
| AT3G14180.1 | Thale cress | nucleus | 37.29 | 30.47 |
| Zm00001d010753_P001 | Maize | nucleus | 27.35 | 30.18 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 34.53 | 29.9 |
| CDY26148 | Canola | nucleus, plastid | 29.01 | 29.41 |
| KXG30464 | Sorghum | nucleus, plastid | 33.43 | 28.67 |
| Bra030909.1-P | Field mustard | nucleus | 9.94 | 28.12 |
| AT1G54060.1 | Thale cress | nucleus | 29.56 | 27.94 |
| CDY33093 | Canola | cytosol, plastid | 29.28 | 24.26 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 11.88 | 19.2 |
| GSMUA_Achr8P04010_001 | Banana | nucleus | 15.75 | 16.33 |
| GSMUA_Achr8P26150_001 | Banana | nucleus | 15.75 | 16.29 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 29.01 | 15.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P14340_001 | EnsemblPlants:GSMUA_Achr9T14340_001 | EnsemblPlantsGene:GSMUA_Achr9G14340_001 | ncoils:Coil | PANTHER:PTHR31307 | PFAM:PF13837 |
| SEG:seg | UniParc:UPI00029661D0 | UniProt:M0U092 | MapMan:15.5.20 | : | : |
Description
transcription factor like protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G14340_001]
Coordinates
chr9:-:9327871..9329043
Molecular Weight (calculated)
39556.0 Da
IEP (calculated)
10.044
GRAVY (calculated)
-0.887
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDDDDALSP SRSQSQSASR SPSTTSSPPP VSVVPPSSDP SPHVRNGRVA EPVTVAAPPY HALALALSTQ QQRPSPAAVV GGGGGGGGRE DCWSEGATST
101: LIDAWGERFL ELSRGNLKQK HWQEVADAVT SRDGYTKTPK TDVQCKNRID TLKKKYKIEK SKISASDSST TSSWPFFHRL DLLLGPNHKP TGALPPSSTK
201: IPAGIPIRPP ARLTQLIPQR HRSSHPALNK ARSLPPSVSS KSADSSADSS DGRTAGLREL TRAILRFGEV YERVESSKLR QAMEMEKQRM EFTRELELQR
301: LEFLMKTQME LSQLKSHHHH HHGSSSNSRK KRMDVAGGGS NHHNHHDTND NNNSIDNSDN NG
101: LIDAWGERFL ELSRGNLKQK HWQEVADAVT SRDGYTKTPK TDVQCKNRID TLKKKYKIEK SKISASDSST TSSWPFFHRL DLLLGPNHKP TGALPPSSTK
201: IPAGIPIRPP ARLTQLIPQR HRSSHPALNK ARSLPPSVSS KSADSSADSS DGRTAGLREL TRAILRFGEV YERVESSKLR QAMEMEKQRM EFTRELELQR
301: LEFLMKTQME LSQLKSHHHH HHGSSSNSRK KRMDVAGGGS NHHNHHDTND NNNSIDNSDN NG
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAGE T
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.