Factsheet for GSMUA_Achr3P17130_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr8P19010_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01690.1	GSMUA_Achr11P...	AT4G39050.1	21798944
AT3G01690.1	GSMUA_Achr11P...	AT5G28900.1	21798944
AT3G01690.1	GSMUA_Achr8P19010_001	AT5G28900.1	21798944
AT3G01690.1	GSMUA_AchrUn_...	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28640_001	Banana	plastid	91.83	91.83
GSMUA_Achr9P02010_001	Banana	plastid	85.56	85.56
GSMUA_Achr9P07620_001	Banana	plastid	84.47	84.24
CDY31930	Canola	cytosol	13.62	78.12
VIT_14s0219g00290.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	77.93	77.72
KRH07089	Soybean	cytosol	76.57	76.36
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	74.93	74.93
CDY37505	Canola	cytosol, extracellular	13.62	74.63
Solyc02g067920.2.1	Tomato	cytosol	75.2	74.59
KRG93968	Soybean	cytosol	74.39	74.39
KRH58237	Soybean	cytosol	74.11	74.11
Zm00001d030601_P001	Maize	plastid	74.11	74.11
Os12t0286600-01	Rice	cytosol, plastid	76.02	74.01
PGSC0003DMT400039199	Potato	cytosol	74.66	73.85
PGSC0003DMT400017818	Potato	cytosol	74.39	73.58
Solyc03g111770.2.1	Tomato	cytosol	74.11	73.32
CDY03421	Canola	cytosol	70.57	72.14
AT4G24760.1	Thale cress	cytosol, nucleus, plastid	71.66	72.05
GSMUA_Achr9P22720_001	Banana	plastid	19.89	71.57
AT3G01690.1	Thale cress	cytosol, plastid	70.3	71.47
VIT_17s0000g09740.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	75.2	71.32
CDX91066	Canola	plastid	63.49	71.04
KRH54278	Soybean	endoplasmic reticulum	73.57	70.87
KRH63667	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.3	70.79
CDY34308	Canola	cytosol	70.57	70.77
Bra013831.1-P	Field mustard	cytosol	70.57	70.77
CDY32850	Canola	cytosol	64.31	68.6
KRH03885	Soybean	cytosol, plastid	68.66	67.92
KRH57170	Soybean	plastid	68.39	67.66
CDX69584	Canola	endoplasmic reticulum	68.12	67.57
Bra008761.1-P	Field mustard	endoplasmic reticulum	68.12	67.57
CDY09851	Canola	plastid	68.12	67.57
CDY28862	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	66.21	67.31
CDY28668	Canola	cytosol, endoplasmic reticulum, nucleus, plastid	66.21	67.31
AT5G14390.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	67.57	67.21
CDY37504	Canola	cytosol	13.62	65.79
GSMUA_Achr10P...	Banana	plastid	61.58	63.84
CDX77081	Canola	plastid	36.24	63.03
GSMUA_Achr8P17940_001	Banana	plastid	58.58	62.68
KRG94364	Soybean	cytosol	23.71	62.59
CDX85599	Canola	cytosol	44.41	62.45
GSMUA_Achr3P28090_001	Banana	cytosol, nucleus, plastid	64.03	61.04
CDY11031	Canola	cytosol, plastid	39.24	60.25
GSMUA_Achr5P04500_001	Banana	cytosol	48.23	60.0
GSMUA_Achr3P04580_001	Banana	cytosol	47.68	59.32
GSMUA_Achr11P...	Banana	cytosol	47.68	59.32
Bra023463.1-P	Field mustard	cytosol	44.41	59.27
CDX92650	Canola	cytosol	70.03	59.22
GSMUA_Achr9P13240_001	Banana	cytosol	46.05	57.29
Bra040701.1-P	Field mustard	plastid	49.59	56.0
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	47.68	53.52
GSMUA_Achr1P06250_001	Banana	plastid	46.32	50.45
GSMUA_Achr7P17430_001	Banana	cytosol, plastid	44.96	48.39
KRG99188	Soybean	extracellular	13.62	47.62
Bra019211.1-P	Field mustard	nucleus	69.48	46.2
CDY53272	Canola	plastid	18.8	43.95
GSMUA_Achr1P06210_001	Banana	extracellular, plasma membrane	31.88	42.24
GSMUA_Achr1P06220_001	Banana	cytosol, endoplasmic reticulum, extracellular, mitochondrion, plastid	20.98	40.31

Protein Annotations

EnsemblPlants:GSMUA_Achr3P17130_001	EnsemblPlants:GSMUA_Achr3T17130_001	EnsemblPlantsGene:GSMUA_Achr3G17130_001	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	SEG:seg	SUPFAM:SSF53474
UniParc:UPI00029641DB	UniProt:M0SFC9	MapMan:35.2	:	:	:

Description

Abhydrolase domain-containing protein FAM108C1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17130_001]

Coordinates

chr3:-:18386610..18394120

Molecular Weight (calculated)

42029.1 Da

IEP (calculated)

9.296

GRAVY (calculated)

-0.587

Length

367 amino acids

Sequence
(BLAST)

001: MGGVTSSVAA KLAFFPPSPP SYEVVTEPES GVVTLSRFPH RENVEVLRLP TRRGTEIVAL YVRNPMATST LLYSHGNAAD LGQMYELFVE LSIHLRVNLL
101: GYDYSGYGQS SGKPSEQNTY ADIETTYKCL IENYGAKEEE IILYGQSVGS GPTVDLASRL PHLRAVVLHS PILSGLRVMY PVKRTYWFDI YKNIDKISLV
201: HCPVLVIHGT SDDVVDFSHG KKLWELCNEK YEPLWLKGGR HCDLELFPEY IRHLKKFIST VEKSPSQRRT WRKGAEQFEP SRKSTDCFEP SRKSIDRREK
301: SRSTTEKSRN KDQRSTNVEK LEKVKVSFDQ LEKSRRSLDC FDKSRKNIDQ LDRGRKSVDR LDRIWAG

Best Arabidopsis Sequence Match ( AT4G24760.1 )
(BLAST)

001: MGGVTSSMAA KLAFFPPNPP SYKLVRDETT ELFLMSPFPH RENVDILRLP TRRGTEIVAM YIRYPMAVTT LLYSHGNAAD IGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPTEQNTY ADIEAAYKCL EENYGAKQEN IILYGQSVGS GPTVDLAARL PRLRASILHS PILSGLRVMY PVKRTYWFDI YKNIDKITLV
201: RCPVLVIHGT ADDVVDFSHG KQLWELCQEK YEPLWLKGGN HCDLELFPEY IGHLKKFVSA VEKSASKRNS SFSRRSMEGC EQPPRHSVDA PRKSKDGREK
301: PRKSIDRLRF QGYKLSHIEK PEKLKVPFEE MERSRRSVDI YRDKSQPMER ARKSVDWLDR SRATE

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SB70]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.