Factsheet for PGSC0003DMT400039199

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111770.2.1	Tomato	cytosol	98.38	98.38
VIT_17s0000g09740.t01	Wine grape	cytosol, endoplasmic reticulum, nucleus	85.44	81.91
PGSC0003DMT400017818	Potato	cytosol	80.05	80.05
CDY03421	Canola	cytosol	75.2	77.72
KRH63667	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	79.25	77.37
KRH54278	Soybean	endoplasmic reticulum	79.25	77.17
AT4G24760.1	Thale cress	cytosol, nucleus, plastid	75.74	76.99
Bra013831.1-P	Field mustard	cytosol	75.47	76.5
CDY34308	Canola	cytosol	75.47	76.5
GSMUA_Achr9P02010_001	Banana	plastid	74.66	75.48
GSMUA_Achr3P17130_001	Banana	plastid	73.85	74.66
GSMUA_Achr8P28640_001	Banana	plastid	72.51	73.3
PGSC0003DMT400068320	Potato	cytosol	52.83	69.75
GSMUA_Achr9P07620_001	Banana	plastid	68.73	69.29
OQU79022	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	68.46	69.21
Zm00001d030601_P001	Maize	plastid	68.19	68.94
Os12t0286600-01	Rice	cytosol, plastid	69.81	68.7
PGSC0003DMT400003495	Potato	plastid	66.04	64.99
CDX92650	Canola	cytosol	74.39	63.59
PGSC0003DMT400067845	Potato	cytosol, plastid	57.95	63.42
PGSC0003DMT400006272	Potato	plastid	56.6	61.58
PGSC0003DMT400068318	Potato	plastid	17.79	58.41
PGSC0003DMT400008297	Potato	cytosol	46.09	57.97
GSMUA_Achr9P22710_001	Banana	endoplasmic reticulum, golgi	48.79	55.35
PGSC0003DMT400062645	Potato	mitochondrion	56.6	53.03
PGSC0003DMT400050553	Potato	cytosol	52.83	52.83
Bra019211.1-P	Field mustard	nucleus	73.32	49.28
PGSC0003DMT400006166	Potato	plasma membrane, plastid	43.4	41.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400039199	EnsemblPlantsGene:PGSC0003DMG400015158	EntrezGene:102599931	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	PGSC:PGSC0003DMG400015158	RefSeq:XP_006351436.1
SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002963581	UniProt:M1B7X1	MapMan:35.2	:

Description

Protein bem46 [Source:PGSC_GENE;Acc:PGSC0003DMG400015158]

Coordinates

chr3:-:51405704..51410446

Molecular Weight (calculated)

42727.2 Da

IEP (calculated)

9.399

GRAVY (calculated)

-0.622

Length

371 amino acids

Sequence
(BLAST)

001: MGGVTSSMAA KLAFFPPNPP SYRVVTDQLT GLLLLDTFPH RENVDVLKFP TRRGTEILAI YIRYPMATTT LLYSHGNAAD IGQMYELFIQ LSIHLKVNLM
101: GYDYSGYGQS SGKPSEQNTY ADIEAAYKCL EESYGAKQED IILYGQSVGS GPTADLAARL PRLRAVILHS PILSGLRVMY PVKRTYWFDI YKNIDKIPLV
201: KCPVLIIHGT SDEVVDCSHG KQLWELCQEK YEPLWLKGGT HCDLELYPEY IRHLKKFVST VEKPPSQRNL SRKSVDRPEQ SRKSTDCYEG PRKSTDRREK
301: PRKSTDKPEK LKNYEYKYAN DDKLSKLRMS FDQVERSRRS VEFFEKPRRS IDQQMEKARK SVDWLDRIRA G

Best Arabidopsis Sequence Match ( AT4G24760.1 )
(BLAST)

001: MGGVTSSMAA KLAFFPPNPP SYKLVRDETT ELFLMSPFPH RENVDILRLP TRRGTEIVAM YIRYPMAVTT LLYSHGNAAD IGQMYELFIE LSIHLRVNLM
101: GYDYSGYGQS SGKPTEQNTY ADIEAAYKCL EENYGAKQEN IILYGQSVGS GPTVDLAARL PRLRASILHS PILSGLRVMY PVKRTYWFDI YKNIDKITLV
201: RCPVLVIHGT ADDVVDFSHG KQLWELCQEK YEPLWLKGGN HCDLELFPEY IGHLKKFVSA VEKSASKRNS SFSRRSMEGC EQPPRHSVDA PRKSKDGREK
301: PRKSIDRLRF QGYKLSHIEK PEKLKVPFEE MERSRRSVDI YRDKSQPMER ARKSVDWLDR SRATE

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SB70]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.