Factsheet for PGSC0003DMT400067845

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400029374
PGSC0003DMT400035458
PGSC0003DMT400052841
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT5G38220.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT5G38220.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT5G38220.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT5G38220.1	PGSC0003DMT400068387	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086220.2.1	Tomato	cytosol, plastid	98.23	97.94
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	85.55	84.8
PGSC0003DMT400006272	Potato	plastid	83.78	83.28
AT1G66900.1	Thale cress	cytosol	63.72	79.41
Bra030401.1-P	Field mustard	cytosol	63.72	79.41
Bra034043.1-P	Field mustard	cytosol	63.72	79.41
Bra037774.1-P	Field mustard	cytosol	63.72	79.41
CDY27016	Canola	plastid	79.35	78.66
Bra028401.1-P	Field mustard	plastid	79.35	78.2
CDY51065	Canola	plastid	79.35	78.2
AT5G38220.1	Thale cress	cytosol	77.29	77.98
KRH18213	Soybean	plastid	80.83	77.62
KRG93935	Soybean	plastid	79.35	75.99
PGSC0003DMT400062645	Potato	mitochondrion	83.78	71.72
PGSC0003DMT400068320	Potato	cytosol	56.64	68.33
GSMUA_Achr8P17940_001	Banana	plastid	69.03	68.22
Os01t0689800-01	Rice	plastid	69.91	65.11
TraesCS3D01G262400.2	Wheat	plastid	67.85	63.89
TraesCS3B01G295700.1	Wheat	plastid	68.14	63.64
HORVU3Hr1G064120.3	Barley	plastid	67.85	63.54
TraesCS3A01G262400.1	Wheat	plastid	67.85	63.19
EES01292	Sorghum	plastid	68.44	62.7
Zm00001d043801_P002	Maize	plastid	67.85	62.16
Zm00001d011624_P001	Maize	plastid	67.55	61.89
PGSC0003DMT400068318	Potato	plastid	20.35	61.06
PGSC0003DMT400008297	Potato	cytosol	51.62	59.32
PGSC0003DMT400039199	Potato	cytosol	63.42	57.95
PGSC0003DMT400017818	Potato	cytosol	63.13	57.68
PGSC0003DMT400003495	Potato	plastid	61.95	55.7
PGSC0003DMT400050553	Potato	cytosol	51.62	47.17
PGSC0003DMT400006166	Potato	plasma membrane, plastid	47.79	41.54
Zm00001d042401_P001	Maize	plastid	47.79	33.47

Protein Annotations

EnsemblPlants:PGSC0003DMT400067845	EnsemblPlantsGene:PGSC0003DMG401026387	EntrezGene:102586086	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4
InterPro:IPR029058	MEROPS:S09.A25	PANTHER:PTHR12277	PANTHER:PTHR12277:SF118	PFAM:PF12146	PGSC:PGSC0003DMG401026387
RefSeq:XP_006357838.1	SEG:seg	SUPFAM:SSF53474	UniParc:UPI000294FC27	UniProt:M1CHY4	MapMan:35.2

Description

Cgi67 serine protease [Source:PGSC_GENE;Acc:PGSC0003DMG401026387]

Coordinates

chr2:-:41445448..41451320

Molecular Weight (calculated)

37847.3 Da

IEP (calculated)

9.391

GRAVY (calculated)

-0.462

Length

339 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPTPP SYTVVPDDGK FSIPEVARRD GVDFLKLRTR RGNEIVAVHV KHPKASATML YSHGNAADLG QMFELFVELS LRLRVNLMGY
101: DYSGYGQSSG KPSECNTYAD IDAVYKCLKE QYGVKDEQLI LYGQSVGSGP TVDLASRVPN LRGVVLHSPI LSGVRVLYPV KRTYWFDIYK NIDKISAVNC
201: PVLVIHGTAD EVVDYSHGKQ LWELCKEKYE PLWLNGGGHC NLELYPEYIK HLKKFVLGLG KPKPAANGPQ KASTESENQS KPAESGATDT FDLKPDLPEI
301: SRNSLDSRLE KTKKSNKPEK SRMSTDRVDR FRRRKGLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.