Factsheet for PGSC0003DMT400062645

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400029374
PGSC0003DMT400035458
PGSC0003DMT400052841
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT5G38220.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT5G38220.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT5G38220.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT5G38220.1	PGSC0003DMT400068387	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006272	Potato	plastid	85.86	99.71
Solyc03g034270.2.1	Tomato	plastid	81.82	95.29
PGSC0003DMT400067845	Potato	cytosol, plastid	71.72	83.78
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	69.7	80.7
AT1G66900.1	Thale cress	cytosol	53.79	78.31
Bra030401.1-P	Field mustard	cytosol	53.54	77.94
Bra034043.1-P	Field mustard	cytosol	53.54	77.94
Bra037774.1-P	Field mustard	cytosol	53.54	77.94
AT5G38220.1	Thale cress	cytosol	62.63	73.81
KRH18213	Soybean	plastid	65.66	73.65
CDY27016	Canola	plastid	63.38	73.39
Bra028401.1-P	Field mustard	plastid	63.38	72.97
CDY51065	Canola	plastid	63.38	72.97
KRG93935	Soybean	plastid	64.9	72.6
GSMUA_Achr8P17940_001	Banana	plastid	57.32	66.18
PGSC0003DMT400068320	Potato	cytosol	46.72	65.84
TraesCS3D01G262400.2	Wheat	plastid	57.07	62.78
TraesCS3B01G295700.1	Wheat	plastid	57.07	62.26
HORVU3Hr1G064120.3	Barley	plastid	56.82	62.15
Os01t0689800-01	Rice	plastid	57.07	62.09
TraesCS3A01G262400.1	Wheat	plastid	56.82	61.81
EES01292	Sorghum	plastid	57.07	61.08
PGSC0003DMT400068318	Potato	plastid	17.42	61.06
Zm00001d043801_P002	Maize	plastid	56.82	60.81
Zm00001d011624_P001	Maize	plastid	56.06	60.0
PGSC0003DMT400008297	Potato	cytosol	42.68	57.29
PGSC0003DMT400017818	Potato	cytosol	53.28	56.87
PGSC0003DMT400039199	Potato	cytosol	53.03	56.6
PGSC0003DMT400003495	Potato	plastid	52.53	55.17
PGSC0003DMT400050553	Potato	cytosol	42.93	45.82
PGSC0003DMT400006166	Potato	plasma membrane, plastid	40.4	41.03
Zm00001d042401_P001	Maize	plastid	39.65	32.44

Protein Annotations

EnsemblPlants:PGSC0003DMT400062645	EnsemblPlantsGene:PGSC0003DMG400024378	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058
PANTHER:PTHR12277	PANTHER:PTHR12277:SF124	PFAM:PF12146	PGSC:PGSC0003DMG400024378	SEG:seg	SUPFAM:SSF53474
UniParc:UPI000295E762	UniProt:M1C9C8	MapMan:35.2	:	:	:

Description

Cgi67 serine protease [Source:PGSC_GENE;Acc:PGSC0003DMG400024378]

Coordinates

chr3:-:4975675..4982530

Molecular Weight (calculated)

44147.2 Da

IEP (calculated)

9.629

GRAVY (calculated)

-0.307

Length

396 amino acids

Sequence
(BLAST)

001: MKFQGSTFLF SKTRLLFPIH APPFTTTSSL TATTHNVTVI RRKKDTSIYE SYVINMGGVT SSIAAKFAFF PPNPPSYTVV SDKACGGKLC IPEIPRRENV
101: DVLKLRTHRG NEIVAVYVKH PKASASMLYS HGNAADLGQM FELFVELSLR LRVNLMGYDY SGYGQSTGKT SECNTYADID AVYKCLKEQY EVKDEQLILY
201: GQSVGSGPTV DLASHTPNLR AVVLHGPILS GLRVLYPLKH THWFDIYKNV EKISLVNCPV LVIHGTADEV VDCSHGKQLY ELCKEKYEPL WINGGGHCNL
301: ELYPVYIKHL KKFVLGLGKS KTATNGSHKP SLVSDTKKPA ESVSSNTLNL HSDLPEISRN SLDSRLDKAK KSNKPEKSRM STGCVDRFRR RKGLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.