Factsheet for Solyc03g034270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082100.2.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc10g005220.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	Solyc02g082100.2.1	AT1G30860.1	21798944
AT5G38220.1	Solyc10g005220.2.1	AT1G30860.1	21798944
AT5G38220.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT5G38220.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT5G38220.1	Solyc08g077460.2.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006272	Potato	plastid	95.59	95.31
Solyc02g086220.2.1	Tomato	cytosol, plastid	82.06	82.06
PGSC0003DMT400062645	Potato	mitochondrion	95.29	81.82
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.41	78.95
AT1G66900.1	Thale cress	cytosol	62.65	78.31
Bra030401.1-P	Field mustard	cytosol	62.35	77.94
Bra034043.1-P	Field mustard	cytosol	62.35	77.94
Bra037774.1-P	Field mustard	cytosol	62.35	77.94
AT5G38220.1	Thale cress	cytosol	71.47	72.32
CDY27016	Canola	plastid	72.35	71.93
KRH18213	Soybean	plastid	74.41	71.67
CDY51065	Canola	plastid	72.35	71.51
Bra028401.1-P	Field mustard	plastid	72.35	71.51
KRG93935	Soybean	plastid	73.53	70.62
Solyc02g065700.2.1	Tomato	cytosol	54.41	65.84
GSMUA_Achr8P17940_001	Banana	plastid	65.29	64.72
TraesCS3D01G262400.2	Wheat	plastid	65.29	61.67
TraesCS3B01G295700.1	Wheat	plastid	65.29	61.16
HORVU3Hr1G064120.3	Barley	plastid	65.0	61.05
Os01t0689800-01	Rice	plastid	65.0	60.71
TraesCS3A01G262400.1	Wheat	plastid	65.0	60.71
EES01292	Sorghum	plastid	65.0	59.73
Zm00001d043801_P002	Maize	plastid	64.71	59.46
Zm00001d011624_P001	Maize	plastid	63.82	58.65
Solyc07g005130.2.1	Tomato	cytosol	50.0	57.63
Solyc02g089320.2.1	Tomato	plastid	59.71	56.55
Solyc02g067920.2.1	Tomato	cytosol	60.29	55.41
Solyc03g111770.2.1	Tomato	cytosol	60.29	55.26
Solyc05g010680.1.1	Tomato	cytosol	50.0	44.39
Solyc08g076350.2.1	Tomato	plastid	46.76	40.77
Zm00001d042401_P001	Maize	plastid	44.71	31.41

Protein Annotations

EnsemblPlants:Solyc03g034270.2.1	EnsemblPlantsGene:Solyc03g034270.2	Gene3D:3.40.50.1820	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058
MEROPS:S09.A25	PANTHER:PTHR12277	PANTHER:PTHR12277:SF124	PFAM:PF12146	SEG:seg	SUPFAM:SSF53474
UniParc:UPI0002767D91	UniProt:K4BFU8	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3:-:6008882..6015507

Molecular Weight (calculated)

37800.5 Da

IEP (calculated)

9.605

GRAVY (calculated)

-0.391

Length

340 amino acids

Sequence
(BLAST)

001: MGGVTSSIAA KFAFFPPNPP SYTVVSDKSC GGKLCIPEIP RRENVDVLKL RTHRGNEIVA VYVKHPKASA SMLYSHGNAA DLGQMFELFV ELSLRLRVNL
101: MGYDYSGYGR STGKPSECNT YGDIDAVYKC LKEQYEVKDE QLILYGQSVG SGPTVDLASH TPNLRAVVLH GPILSGLRVL YPLKHTHWFD IYKNVEKISL
201: VNCPVLVIHG TADEVVDCSH GKRLYELCKK KYEPLWINGG GHCNLELYPV YIKHLKKFVL GLGKSKHASN GSHKPALISD TKKPAENVSS NTFNLHSDLP
301: EIPRNSLDSR LDKTKKSNKP EKSRTSTGCV DRFRRRKGLA

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.