Factsheet for Zm00001d043801_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006417_P002
Zm00001d017649_P001
Zm00001d021532_P001
Zm00001d029988_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38220.1	Zm00001d006417_P002	AT1G30860.1	21798944
AT5G38220.1	Zm00001d021532_P001	AT1G30860.1	21798944
AT5G38220.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT5G38220.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT5G38220.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT5G38220.1	Zm00001d051484_P001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01292	Sorghum	plastid	93.51	93.51
Zm00001d011624_P001	Maize	plastid	92.7	92.7
Os01t0689800-01	Rice	plastid	86.22	87.64
HORVU3Hr1G064120.3	Barley	plastid	83.51	85.36
TraesCS3B01G295700.1	Wheat	plastid	83.51	85.12
TraesCS3D01G262400.2	Wheat	plastid	82.7	85.0
TraesCS3A01G262400.1	Wheat	plastid	83.51	84.89
AT1G66900.1	Thale cress	cytosol	52.16	70.96
GSMUA_Achr8P17940_001	Banana	plastid	63.24	68.22
PGSC0003DMT400067845	Potato	cytosol, plastid	62.16	67.85
Solyc02g086220.2.1	Tomato	cytosol, plastid	61.89	67.35
VIT_14s0006g02620.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.16	67.25
PGSC0003DMT400006272	Potato	plastid	60.54	65.69
AT5G38220.1	Thale cress	cytosol	58.92	64.88
Solyc03g034270.2.1	Tomato	plastid	59.46	64.71
CDY51065	Canola	plastid	59.46	63.95
CDY27016	Canola	plastid	58.92	63.74
KRH18213	Soybean	plastid	60.81	63.74
KRG93935	Soybean	plastid	60.54	63.28
Bra014940.1-P	Field mustard	cytosol	13.51	61.73
Bra004197.1-P	Field mustard	cytosol	13.24	60.49
PGSC0003DMT400062645	Potato	mitochondrion	60.81	56.82
Zm00001d030601_P001	Maize	plastid	52.97	53.41
Zm00001d046660_P001	Maize	plastid	55.68	48.93
Zm00001d015656_P001	Maize	plastid	54.59	46.76
Zm00001d052810_P001	Maize	cytosol	52.7	46.65
Zm00001d012172_P001	Maize	mitochondrion	26.49	41.88
Zm00001d042401_P001	Maize	plastid	51.35	39.26
Zm00001d024530_P001	Maize	cytosol	44.32	38.68
Zm00001d053705_P001	Maize	cytosol	20.54	35.19

Protein Annotations

EnsemblPlants:Zm00001d043801_P002	EnsemblPlants:Zm00001d043801_T002	EnsemblPlantsGene:Zm00001d043801	EntrezGene:103651323	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:Hydrolase_4	InterPro:IPR029058	PANTHER:PTHR12277
PANTHER:PTHR12277:SF118	PFAM:PF12146	ProteinID:ONM39088.1	SEG:seg	SUPFAM:SSF53474	UniParc:UPI0002213A51
UniProt:A0A1D6NF31	MapMan:35.2	:	:	:	:

Description

alpha/beta-Hydrolases superfamily protein

Coordinates

chr3:-:210469627..210473757

Molecular Weight (calculated)

40840.5 Da

IEP (calculated)

9.524

GRAVY (calculated)

-0.397

Length

370 amino acids

Sequence
(BLAST)

001: MGGVTSTIAA RFAFFPPTPP SYTVVVADAA TGRLAIPEIS RALSRRRRRD GAGAGGSSSA SSVAAAENEE GAEVVRLRTR RGNEIVGVYV RHARASATLL
101: YSHGNAADLG QMYGLFVELS RRLRVNLFGY DYSGYGRSTG KPTECNTYAD IEAAYNCLKE KYSVADEDII LYGQSVGSGP TIDLASRLPD LRAVVLHSPI
201: LSGVRVLYPV KRTFWFDIYK NIDKIGLVNC PVLVIHGTSD DVVDCSHGKQ LWEHCKVKYS PLWLNGGGHC NLELYPDYIK HLKQFVSSVS KKTSKPDQKE
301: IMAKDGTTSK EREEAYSEKP QPAAKCSQSQ ISRKSIDSRV GKSKTVDVPD KSRMSSDDID KFRRRRCLVW

Best Arabidopsis Sequence Match ( AT5G38220.1 )
(BLAST)

001: MGGVTSSIAA KFAFFPPSPP SYGFVSDVDR LYITEVPRRD DVDVLKLKTR RGNEIVAIYI KHPKANGTLL YSHGNAADLG QMFELFIELS NRLRLNLMGY
101: DYSGYGQSTG KASECNTYAD IDAAYTCLKE HYGVKDDQLI LYGQSVGSGP TIDLASRTPN LRGVVLHSPI LSGMRVLYPV KRTYWFDIYK NIDKIGAVTC
201: PVLVIHGTAD EVVDCSHGKQ LWELSKEKYE PLWVSGGGHC NLELYPEFIK HLKKYVISIS KGPRTGSNKT ATTDAAKKQS KPAENGRADT FQLGCCLPEV
301: SRNSVDSQLE KSKKTSKPEK SRMSIDRFRR KKGSVW

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FF34]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.