Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER99396 | Sorghum | plastid | 62.52 | 47.54 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 60.82 | 46.18 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 43.61 | 34.64 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 42.76 | 33.16 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 41.06 | 32.83 |
| Os07t0499800-01 | Rice | nucleus | 35.78 | 27.93 |
| HORVU2Hr1G048520.1 | Barley | plastid | 27.94 | 25.51 |
| Zm00001d019766_P001 | Maize | nucleus | 7.33 | 21.5 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 18.74 | 20.26 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 23.51 | 18.98 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 21.47 | 17.28 |
| AT2G34920.2 | Thale cress | nucleus | 16.01 | 14.11 |
| AT1G30860.1 | Thale cress | cytosol | 17.04 | 13.7 |
| CDY31650 | Canola | nucleus, plastid | 14.65 | 13.35 |
| Bra005381.1-P | Field mustard | nucleus | 14.65 | 13.27 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 15.16 | 13.15 |
| KRH12155 | Soybean | nucleus | 20.27 | 12.98 |
| CDY52188 | Canola | nucleus | 14.99 | 12.85 |
| Bra039871.1-P | Field mustard | nucleus | 14.99 | 12.54 |
| CDY09519 | Canola | nucleus | 14.99 | 12.27 |
| CDY12454 | Canola | nucleus | 13.46 | 12.25 |
| CDX96975 | Canola | cytosol | 14.31 | 12.23 |
| Bra023148.1-P | Field mustard | nucleus | 14.48 | 12.06 |
| KRH37161 | Soybean | nucleus | 18.91 | 12.04 |
| CDY02344 | Canola | cytosol | 13.8 | 11.77 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 12.27 | 11.56 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 16.7 | 10.4 |
| PGSC0003DMT400035458 | Potato | nucleus | 17.89 | 10.14 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 17.04 | 10.14 |
| Solyc02g082100.2.1 | Tomato | vacuole | 18.4 | 10.02 |
| CDY50063 | Canola | cytosol | 16.18 | 8.64 |
| CDX78978 | Canola | cytosol | 15.33 | 7.95 |
| CDY14941 | Canola | nucleus | 8.35 | 7.89 |
| AT4G20160.2 | Thale cress | cytosol | 15.5 | 7.5 |
| Zm00001d027308_P001 | Maize | nucleus | 8.52 | 7.47 |
| Bra013447.1-P | Field mustard | nucleus | 15.5 | 7.36 |
| AT5G44690.1 | Thale cress | nucleus | 8.18 | 7.25 |
| Zm00001d051871_P002 | Maize | nucleus | 9.71 | 6.79 |
| Zm00001d019765_P001 | Maize | nucleus | 2.56 | 4.01 |
Protein Annotations
| EnsemblPlants:Zm00001d006417_P002 | EnsemblPlants:Zm00001d006417_T002 | EnsemblPlantsGene:Zm00001d006417 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 | PFscan:PS50089 |
| ProteinID:ONM23757.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000842B0E5 | UniProt:A0A1D6EW17 | MapMan:35.2 |
Description
RING/U-box superfamily protein
Coordinates
chr2:-:207291140..207302436
Molecular Weight (calculated)
63420.3 Da
IEP (calculated)
7.721
GRAVY (calculated)
-0.510
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSVAAMPH ESASSWRDPS RLTPPRGFVT ILISSPDAAG AGGSASSPAA ASEPTPRTRR QILDRWTAAA AATTVTDSAA PAPADQRRVA RDAELSELAS
101: AARPVAARAA VFREPSPAPS DASSTAAAAA ATAPAELPPA GPRASSLIQR WREIEAVGPA TPRPADPGVS AAASASASAS DSDTGSPRGR VGCIVKKLSG
201: ASSLPEDELD DVARSELSLS QSAPPSPAPM RDASHYPYQC PSVASAINGP RPPHLVFRTV RGRRAMEELV AAMAHRRRRE VAALAESHAV SRFPHKGRIQ
301: SMLRLRLLRQ RGTVEDEPWS LLKPVRPHQP KHVGELRYYS RDTDLRKANS YSQQNNGPDE QFCIDKVPAE EKSIYVSAEV LVDGSGNLWC DEQMKTKGDT
401: CQKDCQSFCV HSQNNCEALS FASKKVSKSL ESDFSNKMNQ LLLIVLQKQR QQQMMDGFGG YYDECMYWRQ NDEIHDAHKE ASAPCSSAPV SHLGAHQQEC
501: WQHSSYGSQH HDNQNLLVSL MPNQPDTTAA KGGNCCICHR MQVDSLLYRC GHVCTCFDCA GQLKSSGRSC PICQTPIDDV FRAQLNF
101: AARPVAARAA VFREPSPAPS DASSTAAAAA ATAPAELPPA GPRASSLIQR WREIEAVGPA TPRPADPGVS AAASASASAS DSDTGSPRGR VGCIVKKLSG
201: ASSLPEDELD DVARSELSLS QSAPPSPAPM RDASHYPYQC PSVASAINGP RPPHLVFRTV RGRRAMEELV AAMAHRRRRE VAALAESHAV SRFPHKGRIQ
301: SMLRLRLLRQ RGTVEDEPWS LLKPVRPHQP KHVGELRYYS RDTDLRKANS YSQQNNGPDE QFCIDKVPAE EKSIYVSAEV LVDGSGNLWC DEQMKTKGDT
401: CQKDCQSFCV HSQNNCEALS FASKKVSKSL ESDFSNKMNQ LLLIVLQKQR QQQMMDGFGG YYDECMYWRQ NDEIHDAHKE ASAPCSSAPV SHLGAHQQEC
501: WQHSSYGSQH HDNQNLLVSL MPNQPDTTAA KGGNCCICHR MQVDSLLYRC GHVCTCFDCA GQLKSSGRSC PICQTPIDDV FRAQLNF
0001: MEMASSEVEM SSCQTFNCVL SRPHERCTQR DNNTNNNKKK NNNNNNVRNI HVAAFEKNLN VFVRDHLENC SVSVDDVVDD SIKAVPECSS NKSSVSDHRL
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.