Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0570500-01 | Rice | nucleus | 54.81 | 45.45 |
| KRH66429 | Soybean | nucleus | 22.46 | 39.44 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 35.56 | 30.93 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 44.65 | 19.35 |
| Zm00001d051871_P002 | Maize | nucleus | 41.98 | 18.69 |
| PGSC0003DMT400070376 | Potato | nucleus | 42.78 | 18.52 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 40.11 | 18.47 |
| CDX71406 | Canola | cytosol | 27.27 | 18.25 |
| PGSC0003DMT400043571 | Potato | nucleus | 41.18 | 17.93 |
| Bra009452.1-P | Field mustard | nucleus | 39.84 | 17.8 |
| AT5G04460.1 | Thale cress | nucleus | 40.11 | 17.38 |
| Bra034121.1-P | Field mustard | nucleus | 35.83 | 16.75 |
| Bra029846.1-P | Field mustard | nucleus | 33.42 | 16.17 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 32.89 | 16.1 |
| Zm00001d027308_P001 | Maize | nucleus | 27.81 | 15.55 |
| AT2G27950.2 | Thale cress | nucleus | 32.62 | 14.54 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 32.89 | 14.24 |
| PGSC0003DMT400018447 | Potato | nucleus | 28.34 | 13.89 |
| Zm00001d019766_P001 | Maize | nucleus | 4.28 | 8.0 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 5.61 | 2.72 |
| Zm00001d006417_P002 | Maize | plastid | 4.01 | 2.56 |
Protein Annotations
| EnsemblPlants:Zm00001d019765_P001 | EnsemblPlants:Zm00001d019765_T001 | EnsemblPlantsGene:Zm00001d019765 | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 |
| ProteinID:ONM53714.1 | SEG:seg | UniParc:UPI0008450D3A | UniProt:A0A1D6I0A8 | MapMan:35.2 | : |
Description
RING/U-box superfamily protein
Coordinates
chr7:-:58175007..58176637
Molecular Weight (calculated)
43145.7 Da
IEP (calculated)
4.244
GRAVY (calculated)
-1.130
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSGFESGSP NIAEVFCGSH SQAESQDDLE HERRDWQRFS HAVIGEESER TWRENADNMS SHEGTAVEDD NNDHLPEANE ESTSVDHLPE GLEGSITDGS
101: LPEAQEDQHD SDHLPAVLEE LHGNNHFQES HGEWRRDDRP VEVYDEWQSD DHLPEVNEEW HNDDESNDTA DNWHDNNSDQ PIDHDAALIR RANTFIPGDD
201: DNVYSTELRE LLSRRSVSNL LHSAFRENLD RLIRSYVERQ GRGPLPWDLE GTTPAPPSPV QIQEEQRDDE DQELQRTVNR PPLVIPPPPM PPRQPLWHSE
301: LHRTNWIRQN IHRSSSDIEW EAINDLRADM ARLQQGMSHM QRMLEACMDM QLELQRSVRQ EVSAALNRFI GEQG
101: LPEAQEDQHD SDHLPAVLEE LHGNNHFQES HGEWRRDDRP VEVYDEWQSD DHLPEVNEEW HNDDESNDTA DNWHDNNSDQ PIDHDAALIR RANTFIPGDD
201: DNVYSTELRE LLSRRSVSNL LHSAFRENLD RLIRSYVERQ GRGPLPWDLE GTTPAPPSPV QIQEEQRDDE DQELQRTVNR PPLVIPPPPM PPRQPLWHSE
301: LHRTNWIRQN IHRSSSDIEW EAINDLRADM ARLQQGMSHM QRMLEACMDM QLELQRSVRQ EVSAALNRFI GEQG
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYR
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYR
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.