Factsheet for PGSC0003DMT400001109

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066500.1.1	Tomato	nucleus, plastid	79.75	85.06
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	35.65	37.93
CDY04520	Canola	cytosol, plastid	29.63	37.76
Os09t0570500-01	Rice	nucleus	19.21	36.81
PGSC0003DMT400018447	Potato	nucleus	31.37	35.52
GSMUA_Achr1P00380_001	Banana	nucleus	26.74	34.68
GSMUA_Achr1P17370_001	Banana	nucleus	27.55	34.2
KRH25125	Soybean	nucleus	33.56	33.96
GSMUA_AchrUn_...	Banana	nucleus	29.98	33.59
KRH30548	Soybean	nucleus	33.33	33.49
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	21.06	33.21
Zm00001d019765_P001	Maize	nucleus	14.24	32.89
GSMUA_Achr8P11220_001	Banana	nucleus	28.24	32.4
Bra011990.1-P	Field mustard	nucleus, plastid	28.59	32.33
GSMUA_Achr11P...	Banana	nucleus	26.39	32.25
PGSC0003DMT400070376	Potato	nucleus	32.06	32.06
GSMUA_Achr5P12430_001	Banana	nucleus	26.85	31.65
KXG35138	Sorghum	nucleus	25.58	31.57
Zm00001d019766_P001	Maize	nucleus	7.29	31.5
KRH22786	Soybean	nucleus	30.79	31.33
KRH26545	Soybean	nucleus	28.59	31.03
PGSC0003DMT400043571	Potato	nucleus	30.56	30.73
AT2G27950.2	Thale cress	nucleus	29.63	30.51
HORVU4Hr1G086680.2	Barley	mitochondrion	15.28	30.34
OQU93435	Sorghum	nucleus	22.57	29.86
GSMUA_Achr2P03990_001	Banana	nucleus	24.19	29.73
Os02t0823300-01	Rice	nucleus	25.81	29.58
TraesCS4D01G003000.2	Wheat	nucleus	24.19	29.35
HORVU6Hr1G092920.1	Barley	cytosol	21.76	29.28
EES06049	Sorghum	nucleus	25.58	28.96
TraesCS4A01G311200.1	Wheat	nucleus	23.73	28.67
TraesCS4B01G003100.1	Wheat	nucleus	23.38	28.41
TraesCS6B01G449800.2	Wheat	nucleus	25.0	28.12
TraesCS6A01G405400.1	Wheat	nucleus	24.77	27.94
TraesCS6D01G389100.1	Wheat	nucleus	24.65	27.81
Zm00001d027308_P001	Maize	nucleus	21.41	27.65
Zm00001d051871_P002	Maize	nucleus	25.58	26.31
TraesCS5A01G529500.1	Wheat	plastid	20.37	24.51
TraesCS4D01G354300.1	Wheat	plastid	19.91	24.26
PGSC0003DMT400029374	Potato	nucleus, plastid	7.75	6.8
PGSC0003DMT400035458	Potato	nucleus	7.99	6.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400001109	EnsemblPlantsGene:PGSC0003DMG400000421	EntrezGene:102581423	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	PGSC:PGSC0003DMG400000421	SEG:seg	UniParc:UPI0002965133	UniProt:M0ZHX9	MapMan:35.2

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000421]

Coordinates

chr11:+:39320318..39326008

Molecular Weight (calculated)

98900.1 Da

IEP (calculated)

4.353

GRAVY (calculated)

-0.927

Length

864 amino acids

Sequence
(BLAST)

001: MAVAGLHNIS TFGSSLFIES QSSVSRQRTE HDRPKTRASS IRQMWRELEG EHVVSNSYAP TGDRQRPQGN DGVNEDQNQS HIELDNYFDD GRSVSSDLSS
101: DLGEVERERV RQIIQEWMHT GAKSHSQSLN VSHVNNCSKA QCERMSIHQS GTSSPRDEVA VEIGSQFEQG RDGLLVDHSR RGERKALRRL CGRQALVDLL
201: MRSQREREKE LQGLLESKPV SDFAYRNRIQ SLLRGRFLRN DSLTNDERTA SNAASELGLL RRRHTVSDLR RRRTVSDLRE EILSRLDDNV RTTTNTQLSS
301: PKDEPQPSQS NSEQEVIDEC YDQSELINEE REINGSHVVT NSANTIRELV NHQYNIDQIA ETSEQVGEDE DHDQATSNLE LFSSLPERHN NENIDLVENA
401: GDEWLQEEHA TFHDNDATQS EASDFNDVLN GHFRDLDRNI FEDYDWEGSS AQAEELQEYI AEPEGSDLEQ AEEPEEFETE HEESESQHLY ADQNEWIDDA
501: TENMGGDSQE GTPNQSYPES LDGGIEEQNH TQEPHDDEWH EEAIDDWSDT PSGQDDGSIG RVDTFYTPDD DNVYSIELRE LLSRRRVSNL LRSSFRESLN
601: QLIQSYVERQ GNASFDWDMD GASSYPSDTE QEQQQENVNQ EGPQMNMEGN PFAMTPPPEA PSQPHWNREP EHPNLRRQNP HQRMGESEWD IINELKIDMA
701: VLHQRMNDMQ RMLQTCMEMQ VELQRSVRQE VSAALNRSAG STDVDICGDG LLNDESKWDT VRKGICCLCC NNNIDSLLYR CGHMCTCSKC AEILINEEAK
801: CPMCLAPVVE VIRAFSSQFA RLIYCRIQNK QVKLIICPKI SVYRCVDTYW LLPDIANRKV IVFS

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.