CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26545	Soybean	nucleus	62.43	66.58
KRH30548	Soybean	nucleus	60.31	59.53
KRH66429	Soybean	nucleus	14.02	55.87
KRH25125	Soybean	nucleus	56.07	55.74
CDY04520	Canola	cytosol, plastid	35.1	43.95
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	41.58	43.47
Bra011990.1-P	Field mustard	nucleus, plastid	34.39	38.22
KRH34682	Soybean	nucleus	38.04	38.04
KRG92104	Soybean	nucleus	37.93	37.97
AT2G27950.2	Thale cress	nucleus	36.98	37.43
Solyc11g066500.1.1	Tomato	nucleus, plastid	32.04	33.58
Solyc06g074760.1.1	Tomato	nucleus	29.68	32.9
PGSC0003DMT400018447	Potato	nucleus	28.74	31.98
PGSC0003DMT400001109	Potato	mitochondrion	31.33	30.79
KRH12155	Soybean	nucleus	8.01	7.42
KRH37161	Soybean	nucleus	7.54	6.94

Protein Annotations

EntrezGene:100803851	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02008436	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G3213001
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7M333	EnsemblPlants:KRH22786	ProteinID:KRH22786	ProteinID:KRH22786.1	ProteinID:KRH22787.1
ProteinID:KRH22788.1	ProteinID:KRH22789.1	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106
SUPFAM:SSF57850	UniParc:UPI0002960695	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:41568664..41573007

Molecular Weight (calculated)

95799.8 Da

IEP (calculated)

4.425

GRAVY (calculated)

-0.862

Length

849 amino acids

Sequence
(BLAST)

001: MAVAGVHNVT VLESTFLRES HSQPSGRQGD GGRGGTRSPS VLQMWREIED EQVVRQVQGR PGEVQRSDGL VVDLSQENLP DSSNQREEHM IEDAVLGEND
101: SETWSQSQNE FHDEQEELNN SSRENSSDFG VVERERVRQI FREWMNSGSR DHASNHSQGN NSRGEWLGET EQERVSAIRE WVQMSSQQRG VSSGESREEQ
201: SSEIGTQIEC VRDGFVVNQN EGQHQTEHTR RGIRKLRGRQ VFLDMLKKAE MERQREVQEL LNHRVVSHFP HRNRIQALLR GRFLRNDRSI DNNKSTSIAE
301: SELGLLRQKQ TVSGLREGFV FRKDNFGCSQ ATSNTSDTSS EDDIDVNTIE ETGASSSQAV PTVHSQQSEP NNRVSDGLEI SGDQICSQGT ICENLDRQGS
401: SAHVETRDLE SSSSTRFERE DGTGGNVDTM PTEDPSNGLT QPSLQIEDTD QGNMHELSEV HTEQSQRGDI INDESDIVDD VDLIESIALE GEQQEEVIIE
501: NDGSVWHQSV DDNQLGSTTN EWPQNILGGE DGENSRMQEQ EAPEVWQEDG GFQEAVEIWL GGPSDNEVAP VGRIHGFYFP EDDNVYSVEL RELLSRRSVS
601: NLLGSSFRES LDQLIQSYVE RQGHAHVEWE LQETTPSPLA EQVSRQHSRD PIVSPQATVN SSLDRPLPPT PPPQPLWDRH SRHDNWSQSD INNQRLGIVR
701: SFAGHNCFSL ADEWDIVNDL RIDMVRLQQR MNNMQRMLEA CMDMQLELQR SIRQEVSAAL NRSTGSSDDQ VEFITGIHDG VSTDDKSKWE CVRKGLCCIC
801: CESNIDSLLY RCGHMCTCSK CANDLLQSRR KCPMCQAPVV EVIRAYSIQ

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.