CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34682	Soybean	nucleus	95.75	95.64
VIT_13s0019g05390.t01	Wine grape	nucleus	73.35	72.07
Solyc11g007910.1.1	Tomato	nucleus	67.57	68.38
PGSC0003DMT400070376	Potato	nucleus	68.4	67.13
PGSC0003DMT400043571	Potato	nucleus	65.57	64.73
AT5G04460.1	Thale cress	nucleus	63.33	62.22
Solyc03g071670.1.1	Tomato	nucleus	32.31	61.3
CDX70223	Canola	cytosol	54.25	59.35
CDY44857	Canola	nucleus	53.3	58.17
Bra009452.1-P	Field mustard	nucleus	57.19	57.95
CDY08599	Canola	nucleus	46.7	54.77
Bra029846.1-P	Field mustard	nucleus	49.76	54.59
CDY41355	Canola	nucleus	48.35	54.45
Bra034121.1-P	Field mustard	nucleus	49.41	52.38
CDY00948	Canola	cytosol	43.63	51.32
KRH66429	Soybean	nucleus	10.97	43.66
KRH30548	Soybean	nucleus	41.16	40.58
KRH25125	Soybean	nucleus	39.98	39.7
KRH22786	Soybean	nucleus	37.97	37.93
KRH26545	Soybean	nucleus	34.67	36.93
KRH12155	Soybean	nucleus	10.26	9.49
KRH37161	Soybean	nucleus	10.26	9.44

Protein Annotations

EntrezGene:100805607	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02012728	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G191400
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7N4F6	EnsemblPlants:KRG92104	ProteinID:KRG92104	ProteinID:KRG92104.1	PFAM:PF13920
PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	UniParc:UPI0002956844	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:43002691..43008111

Molecular Weight (calculated)

96584.4 Da

IEP (calculated)

5.782

GRAVY (calculated)

-1.051

Length

848 amino acids

Sequence
(BLAST)

001: MTDFQPLQQK PEPADAHAEF ELGLEEFMRG HLDDCMSFAS CSSSRAPDDE DDEGDQLVRR RRRSDLEGDD LAESSAARRR HSRILSRWAA RQAQEMITTI
101: ERRNRESELM ALAGLHTVSM LDSSFLRGSQ SPTSGQEGAV ERPSTQASAI LQMWRELEDE HLLNRARERM RVRLRHQRNS DSNTNVSSTM SDSRGSENQG
201: SLGDASESET DYGTWSHDQI GSRNAHGDHN GSSREQSPDL GEVERERVRQ IVQGWMESGI SDHSSNVSQR NNNRRAEWLG ETERERVRNI REWVQMISQQ
301: RSSRGSRRDA QVSEGAQSDR ARDVVADNDE SQPEHVRRDM LRLRGRQALV DLLVRIERER QRELQGLLEH RAVSDFAHRN RIQSLLRGRF LRNERTVEDE
401: RPPSMAASEL VQLRQRHTVS GLREGFRSRL ENIVLGQAGT SPDSTSNSNA SETRGDGSQA NSLVDGQQEN YEQQIRSLET DVRQLPNRTG TLESSTSESI
501: SWQEASNQGG NWQEQIAEEG GGNWQRSPFD QTRDGRAVSD WPQEPPRNLT GEDPHPQEAQ RIWHDDNTRE TVGNWSEGPS GASRNRRGVP IRRFNRFHPP
601: DDDNVYSMEL RELLSRRSVS NLLRSGFRES LDQLIQSYVE RQGRAPIDWD LHRNLPTPTP ASPERDPDQQ GEERDEGQHE TINRPSLVLP SPPVPPPQPL
701: WHQDLHQTGW SRHSMHRSEI EWEIMNDLRS DMARLQQGMN HMQRMLEACM DMQLELQRSV RQEVSAALNR SGSENGLSAE TSDDGSKWGH VKKGTCCVCC
801: DNHIDSLLYR CGHMCTCSKC ANELIRGGGK CPLCRAPIVE VVRAYSIL

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.