Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043571 | Potato | nucleus | 78.3 | 40.75 |
| Solyc11g007910.1.1 | Tomato | nucleus | 66.67 | 35.56 |
| KRH34682 | Soybean | nucleus | 61.52 | 32.39 |
| KRG92104 | Soybean | nucleus | 61.3 | 32.31 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 61.3 | 31.75 |
| AT5G04460.1 | Thale cress | nucleus | 55.93 | 28.97 |
| Bra009452.1-P | Field mustard | nucleus | 50.56 | 27.0 |
| CDX70223 | Canola | cytosol | 46.76 | 26.97 |
| Bra029846.1-P | Field mustard | nucleus | 46.09 | 26.65 |
| CDY44857 | Canola | nucleus | 45.64 | 26.25 |
| Bra034121.1-P | Field mustard | nucleus | 46.98 | 26.25 |
| CDY41355 | Canola | nucleus | 42.28 | 25.1 |
| CDY08599 | Canola | nucleus | 39.82 | 24.62 |
| CDY00948 | Canola | cytosol | 38.03 | 23.58 |
| Solyc11g066500.1.1 | Tomato | nucleus, plastid | 27.52 | 15.19 |
| Solyc06g074760.1.1 | Tomato | nucleus | 22.82 | 13.32 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 11.41 | 5.41 |
| Solyc02g082100.2.1 | Tomato | vacuole | 12.3 | 5.1 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 2.68 | 2.79 |
Protein Annotations
| MapMan:35.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| UniProt:K4BHJ7 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | EnsemblPlantsGene:Solyc03g071670.1 | EnsemblPlants:Solyc03g071670.1.1 | UniParc:UPI0002767BD4 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:18316096..18318175
Molecular Weight (calculated)
51901.8 Da
IEP (calculated)
7.043
GRAVY (calculated)
-0.889
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSIQWWIYL FFSHKRQPSL MCGHLDECMS FASSTSARNT EDEDDDSDGP MRRRRRTTSL IEGDDNLAES SAARRRRSRI LSRWVARQAE HMITTIERRN
101: RESELMALAG LHTVSTLDSS FLTESQSPTS RRDAERTSSR SSTILQMWRE LEDAHILNHA RERVRERLTH QRTVDSNTNI SSTSISERRE TENHDSLVDA
201: NESENEYGTW SHDVIGPQIE NREQGNSSCE QSLDLGEVER ERVRQIVRGW MESGISDHSP NASQGNGVPR SEWLGETKRE RVRIVREWVQ MTSQQRGARG
301: GRREEQSNGL RAQADRVHDE SVVEHEEGQP EHVHRDMLRL CGRQALLDLL VRIEGERQRE LQGLLEHRAV SDFAHRCRIQ SLLRGRFLRN ESPAEEERPP
401: SMAASELNHL RQRHTVSGLR YMAWSIMFCC RICLKLNFNQ LLKLAFM
101: RESELMALAG LHTVSTLDSS FLTESQSPTS RRDAERTSSR SSTILQMWRE LEDAHILNHA RERVRERLTH QRTVDSNTNI SSTSISERRE TENHDSLVDA
201: NESENEYGTW SHDVIGPQIE NREQGNSSCE QSLDLGEVER ERVRQIVRGW MESGISDHSP NASQGNGVPR SEWLGETKRE RVRIVREWVQ MTSQQRGARG
301: GRREEQSNGL RAQADRVHDE SVVEHEEGQP EHVHRDMLRL CGRQALLDLL VRIEGERQRE LQGLLEHRAV SDFAHRCRIQ SLLRGRFLRN ESPAEEERPP
401: SMAASELNHL RQRHTVSGLR YMAWSIMFCC RICLKLNFNQ LLKLAFM
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIVILPL RVLASSP
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIVILPL RVLASSP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.