Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029846.1-P | Field mustard | nucleus | 85.85 | 80.08 |
| CDY08599 | Canola | nucleus | 71.15 | 70.95 |
| CDY41355 | Canola | nucleus | 62.69 | 60.03 |
| CDX70223 | Canola | cytosol | 54.37 | 50.58 |
| CDY44857 | Canola | nucleus | 52.57 | 48.78 |
| Solyc11g007910.1.1 | Tomato | nucleus | 50.9 | 43.79 |
| KRG92104 | Soybean | nucleus | 51.32 | 43.63 |
| KRH34682 | Soybean | nucleus | 51.18 | 43.46 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 51.73 | 43.22 |
| PGSC0003DMT400070376 | Potato | nucleus | 51.04 | 42.59 |
| PGSC0003DMT400043571 | Potato | nucleus | 48.96 | 41.09 |
| Solyc03g071670.1.1 | Tomato | nucleus | 23.58 | 38.03 |
| CDY04520 | Canola | cytosol, plastid | 33.43 | 35.55 |
| CDX71406 | Canola | cytosol | 22.47 | 28.98 |
| CDY12454 | Canola | nucleus | 8.6 | 9.61 |
| CDY31650 | Canola | nucleus, plastid | 8.32 | 9.32 |
| CDY52188 | Canola | nucleus | 8.46 | 8.91 |
| CDY02344 | Canola | cytosol | 8.32 | 8.72 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 8.04 | 8.57 |
| CDY14941 | Canola | nucleus | 7.35 | 8.53 |
| CDY09519 | Canola | nucleus | 8.46 | 8.51 |
| CDX96975 | Canola | cytosol | 7.49 | 7.86 |
| CDY50063 | Canola | cytosol | 10.26 | 6.73 |
| CDX78978 | Canola | cytosol | 8.74 | 5.57 |
Protein Annotations
| EnsemblPlants:CDY00948 | EnsemblPlantsGene:GSBRNA2T00110956001 | Gene3D:3.30.40.10 | GO:A0A078EN84 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY00948 | ProteinID:CDY00948.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EF0825 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g42520D
Coordinates
chrLK031923:+:262672..266494
Molecular Weight (calculated)
82824.0 Da
IEP (calculated)
6.714
GRAVY (calculated)
-1.048
Length
721 amino acids
Sequence
(BLAST)
(BLAST)
001: MITTIERRNR ESELIAIAGL HAVSTLDSSF LREETHSPPP PPPPSRRRAA ASERPRTQAS EIFQMWRELE DEHVHNTARE RLRPRQRSAN AFVSGNNESL
101: RGSSESENDY RSSSREQSPD LGDVESERVR QSVRDYVSNV RRRDDNRRGE LVGDTERERV RVIRERMQMT SQQRGARASR REDQQRSLGS QDDRTHESPQ
201: AQRVREGLAV ENEEGQREDT RRDLRRLRGR HAFVDLLMRI EQERQRELQG LLDHRAVSDF SHRNRIQLLL RRRFLRNEPR TDEVRAPSMA ASELRQLRDR
301: HTVSGLREGV SDRLESNTNV DNINTSRINR TIANTTEDSQ RINESLSSSR QGNGTPLLPN DLGRSGSNRT NIDRNWEEET SQERVWPEVF RTDERQNLLQ
401: ATLSQLSERD NGNAVINEQE NSVDDLHQDG TGNSDATVLI EDQSVWPADN TRQSDGNWPE TRFGALRSRR VVPMRRVNRL HLPNDDNVYN IELRELLSRR
501: NVSNLLRSGF RENLDQLIQS YVERRGGLAH VDWDFQPAIS DSQGHHTEQQ RFLQDEDQLD GINQTLPTPP VPPPQPISHH TNYARHSLHR SELGWEMMND
601: LRGEMARLQQ GMSHMQRNLE TCMDMQSELQ RSVRQEVSAA LNRSPGDQGL GAGTSEDGSR WGHVRNGTCC VCCDTDIDAL LYRCGHMCTC SNCGNELVRT
701: GGKCPLCRAP ILEVIRAYTV A
101: RGSSESENDY RSSSREQSPD LGDVESERVR QSVRDYVSNV RRRDDNRRGE LVGDTERERV RVIRERMQMT SQQRGARASR REDQQRSLGS QDDRTHESPQ
201: AQRVREGLAV ENEEGQREDT RRDLRRLRGR HAFVDLLMRI EQERQRELQG LLDHRAVSDF SHRNRIQLLL RRRFLRNEPR TDEVRAPSMA ASELRQLRDR
301: HTVSGLREGV SDRLESNTNV DNINTSRINR TIANTTEDSQ RINESLSSSR QGNGTPLLPN DLGRSGSNRT NIDRNWEEET SQERVWPEVF RTDERQNLLQ
401: ATLSQLSERD NGNAVINEQE NSVDDLHQDG TGNSDATVLI EDQSVWPADN TRQSDGNWPE TRFGALRSRR VVPMRRVNRL HLPNDDNVYN IELRELLSRR
501: NVSNLLRSGF RENLDQLIQS YVERRGGLAH VDWDFQPAIS DSQGHHTEQQ RFLQDEDQLD GINQTLPTPP VPPPQPISHH TNYARHSLHR SELGWEMMND
601: LRGEMARLQQ GMSHMQRNLE TCMDMQSELQ RSVRQEVSAA LNRSPGDQGL GAGTSEDGSR WGHVRNGTCC VCCDTDIDAL LYRCGHMCTC SNCGNELVRT
701: GGKCPLCRAP ILEVIRAYTV A
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.