Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41355 | Canola | nucleus | 74.97 | 71.98 |
| CDY00948 | Canola | cytosol | 70.95 | 71.15 |
| CDX70223 | Canola | cytosol | 57.68 | 53.81 |
| CDY44857 | Canola | nucleus | 57.68 | 53.67 |
| KRG92104 | Soybean | nucleus | 54.77 | 46.7 |
| KRH34682 | Soybean | nucleus | 54.77 | 46.64 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 55.6 | 46.58 |
| Solyc11g007910.1.1 | Tomato | nucleus | 52.28 | 45.11 |
| PGSC0003DMT400070376 | Potato | nucleus | 53.39 | 44.68 |
| PGSC0003DMT400043571 | Potato | nucleus | 51.31 | 43.19 |
| Solyc03g071670.1.1 | Tomato | nucleus | 24.62 | 39.82 |
| CDY04520 | Canola | cytosol, plastid | 31.81 | 33.92 |
| CDX71406 | Canola | cytosol | 21.44 | 27.73 |
| CDY12454 | Canola | nucleus | 9.82 | 11.01 |
| CDY52188 | Canola | nucleus | 10.1 | 10.66 |
| CDY31650 | Canola | nucleus, plastid | 8.99 | 10.09 |
| CDY02344 | Canola | cytosol | 9.27 | 9.74 |
| CDY09519 | Canola | nucleus | 9.13 | 9.21 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 8.02 | 8.57 |
| CDX96975 | Canola | cytosol | 7.19 | 7.57 |
| CDY14941 | Canola | nucleus | 6.22 | 7.25 |
| CDY50063 | Canola | cytosol | 9.54 | 6.28 |
| CDX78978 | Canola | cytosol | 9.41 | 6.01 |
Protein Annotations
| EnsemblPlants:CDY08599 | EnsemblPlantsGene:GSBRNA2T00000391001 | Gene3D:3.30.40.10 | GO:A0A078F6C7 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:CDY08599 | ProteinID:CDY08599.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EEB518 |
| UniProt:A0A078F6C7 | MapMan:35.2 | : | : | : | : |
Description
BnaA05g28350DBnaA05g28350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6C7]
Coordinates
chrLK031986:-:855858..859263
Molecular Weight (calculated)
83734.1 Da
IEP (calculated)
6.303
GRAVY (calculated)
-1.050
Length
723 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDIDPLNQK TESMDRRFED FNDGCISFES CNDHDQEDEH LLRRRRRSDL EGDDIAESSA ARRRQSRILS RWAARQAQEM ITTIERRNRE SELIAIAGLH
101: AVSTLDSSFL REETHSPPLR RERPRTQASE IFQMWRELED EHSENGYRSS SREQSPDLGD VESERVRRSV RDYVSNVRRR DDNRRGELVG DTERERVRVI
201: RERMQMTSQQ RGARASRRED QQRSLGSQDD RPQVQRVGRH AFVDLLMRIE QERQRELQGL LDHRAVSDFS HRNRIQLLLR RRFLRNEPRT EEVRAPSMAA
301: SELRQLRDRH TVSGLREGVS DRLESNTNVD NINTSRINRT IANTTEDSQR LNESLSSSRQ GNGTPLLPND LGRSGSNRTN VGRNWEEHTT SQESVWPEVF
401: RTDERRNLLE ATLSQLSERD NGNAVINEQE NSVDDLHQDG TGNSDATVLI EDQSVWPEDS SRHSDGNWPE TRFGALRSRR VVPMRRVNRL HLPNDDNVYN
501: IELRELLSRR NVSNFLRSGF RENLDQLIQS YVERRVDWEA ISDSQEHHTE QQRFLQDEDQ LDGINQTLPT PPVPPPQPIR HHTNYARHSL HRSELGWEMM
601: NDLRGEMARL QQGMSHMQRN LETCMDMQSE LQRSVRQEVS AALNRSPGDQ GLGAGTSEDG SRWGHVRNGT CCVCCDTDID ALLYRCGHMC TCSNCGNELV
701: RTGGKCPLCR APILEVIRAY TVA
101: AVSTLDSSFL REETHSPPLR RERPRTQASE IFQMWRELED EHSENGYRSS SREQSPDLGD VESERVRRSV RDYVSNVRRR DDNRRGELVG DTERERVRVI
201: RERMQMTSQQ RGARASRRED QQRSLGSQDD RPQVQRVGRH AFVDLLMRIE QERQRELQGL LDHRAVSDFS HRNRIQLLLR RRFLRNEPRT EEVRAPSMAA
301: SELRQLRDRH TVSGLREGVS DRLESNTNVD NINTSRINRT IANTTEDSQR LNESLSSSRQ GNGTPLLPND LGRSGSNRTN VGRNWEEHTT SQESVWPEVF
401: RTDERRNLLE ATLSQLSERD NGNAVINEQE NSVDDLHQDG TGNSDATVLI EDQSVWPEDS SRHSDGNWPE TRFGALRSRR VVPMRRVNRL HLPNDDNVYN
501: IELRELLSRR NVSNFLRSGF RENLDQLIQS YVERRVDWEA ISDSQEHHTE QQRFLQDEDQ LDGINQTLPT PPVPPPQPIR HHTNYARHSL HRSELGWEMM
601: NDLRGEMARL QQGMSHMQRN LETCMDMQSE LQRSVRQEVS AALNRSPGDQ GLGAGTSEDG SRWGHVRNGT CCVCCDTDID ALLYRCGHMC TCSNCGNELV
701: RTGGKCPLCR APILEVIRAY TVA
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.