CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04520	Canola	cytosol, plastid	55.1	45.43
KRH66429	Soybean	nucleus	12.88	33.8
Os09t0570500-01	Rice	nucleus	25.04	31.04
Solyc03g071680.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	22.9	29.77
Zm00001d019765_P001	Maize	nucleus	18.25	27.27
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	26.3	26.82
HORVU4Hr1G086680.2	Barley	mitochondrion	20.04	25.75
KXG35138	Sorghum	nucleus	30.95	24.71
GSMUA_Achr1P17370_001	Banana	nucleus	30.77	24.71
GSMUA_Achr1P00380_001	Banana	nucleus	27.91	23.42
GSMUA_AchrUn_...	Banana	nucleus	31.31	22.7
OQU93435	Sorghum	nucleus	26.48	22.66
CDY00948	Canola	cytosol	28.98	22.47
GSMUA_Achr11P...	Banana	nucleus	28.26	22.35
HORVU6Hr1G092920.1	Barley	cytosol	25.22	21.96
TraesCS4A01G311200.1	Wheat	nucleus	28.09	21.96
TraesCS4D01G003000.2	Wheat	nucleus	27.73	21.77
EES06049	Sorghum	nucleus	29.52	21.63
GSMUA_Achr5P12430_001	Banana	nucleus	28.26	21.56
TraesCS4B01G003100.1	Wheat	nucleus	27.37	21.52
CDY41355	Canola	nucleus	28.98	21.51
CDY08599	Canola	nucleus	27.73	21.44
CDX70223	Canola	cytosol	29.16	21.03
GSMUA_Achr8P11220_001	Banana	nucleus	28.26	20.98
CDY44857	Canola	nucleus	28.98	20.85
TraesCS6D01G389100.1	Wheat	nucleus	28.44	20.76
GSMUA_Achr2P03990_001	Banana	nucleus	25.94	20.63
TraesCS6A01G405400.1	Wheat	nucleus	27.55	20.1
TraesCS6B01G449800.2	Wheat	nucleus	27.37	19.92
TraesCS4D01G354300.1	Wheat	plastid	24.87	19.61
TraesCS5A01G529500.1	Wheat	plastid	23.79	18.52
CDY31650	Canola	nucleus, plastid	5.37	4.66
CDY02344	Canola	cytosol	5.55	4.51
CDY52188	Canola	nucleus	5.01	4.09
CDY12454	Canola	nucleus	4.65	4.03
CDY14941	Canola	nucleus	3.94	3.54
CDY09519	Canola	nucleus	4.47	3.49
CDX84276	Canola	endoplasmic reticulum, extracellular	3.76	3.1
CDY50063	Canola	cytosol	5.37	2.73
CDX78978	Canola	cytosol	5.19	2.56
CDX96975	Canola	cytosol	3.04	2.47

Protein Annotations

EnsemblPlants:CDX71406	EnsemblPlantsGene:GSBRNA2T00148233001	Gene3D:3.30.40.10	GO:A0A078C314	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	ProteinID:CDX71406	ProteinID:CDX71406.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI0004EF4985
MapMan:35.2	:	:	:	:	:

Description

BnaC04g16410D

Coordinates

chrLK031793:+:588207..590711

Molecular Weight (calculated)

63077.3 Da

IEP (calculated)

4.116

GRAVY (calculated)

-0.980

Length

559 amino acids

Sequence
(BLAST)

001: MLEELRVALL RGRFLRNGVK DDKEKPTSSA ATELGFLRER QTVSELREEF ISRLDRSVSG QASTSHSETS SDTETDDSRG EQNNQDNIND ADGGSDHNRD
101: SHNSLDEVTD SRRSSNRSTS LEERTARVEG WQGQLPENIQ SEWQRSDGDE FSQRRNDAEA DLNIHQREDA ASCSSSEQSL QSPEEIATTG PTIDLQEHLP
201: ENINLTFTLE EQSEEEILGN EESDWQLING QWRDDAEEEA DTNVPESFPN QFSQISSVDE DGEDHGPLQP TEMQADDSDL QSPVQDWSEE HSDEDTVSIG
301: RAATFFPQDD DNGNMELREL SSRRRVSNLL QSGFRENLDQ LIQSYVDRRS RDPVDWEEHE TFPDPLLADE HTEQQADDAQ SGGGGGQEVE AVESPPLSLP
401: SPVIPVQAFW DHDRSNSSWP AHDMHQRIGM DWDSINDLRI DMGRIHQRMD NLQRMLEACM EMQLELQRSI RQEVSAAMHR SADSSGPSSS DAESYESKWE
501: YVRKGICCIC CESNIDSLLY RCGHMNTCEK CAKKLVEAGG KCPMCQAPVV EAVRAYSIL

Best Arabidopsis Sequence Match ( AT2G27950.1 )
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Arabidopsis Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.