Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0823300-01 | Rice | nucleus | 77.85 | 78.78 |
| Zm00001d051871_P002 | Maize | nucleus | 85.58 | 77.74 |
| TraesCS6A01G405400.1 | Wheat | nucleus | 71.95 | 71.67 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 70.38 | 69.92 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 68.94 | 68.67 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 52.82 | 62.77 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 39.06 | 44.74 |
| KXG35138 | Sorghum | nucleus | 40.5 | 44.14 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 40.5 | 41.04 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 46.13 | 40.79 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 38.27 | 39.84 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 22.02 | 39.07 |
| PGSC0003DMT400070376 | Potato | nucleus | 43.38 | 38.31 |
| KRH66429 | Soybean | nucleus | 10.48 | 37.56 |
| OQU93435 | Sorghum | nucleus | 31.72 | 37.06 |
| Bra009452.1-P | Field mustard | nucleus | 40.37 | 36.8 |
| PGSC0003DMT400043571 | Potato | nucleus | 41.02 | 36.44 |
| AT5G04460.1 | Thale cress | nucleus | 40.63 | 35.92 |
| Bra029846.1-P | Field mustard | nucleus | 36.17 | 35.7 |
| Bra034121.1-P | Field mustard | nucleus | 35.78 | 34.12 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 35.91 | 33.74 |
| CDX71406 | Canola | cytosol | 21.63 | 29.52 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 27.79 | 27.75 |
| AT2G27950.2 | Thale cress | nucleus | 30.28 | 27.53 |
| PGSC0003DMT400018447 | Potato | nucleus | 27.39 | 27.39 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 28.96 | 25.58 |
| EER99396 | Sorghum | plastid | 9.44 | 9.33 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:8059709 | UniProt:C5XWK6 | ncoils:Coil | EnsemblPlants:EES06049 |
| ProteinID:EES06049 | ProteinID:EES06049.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR10044 |
| PANTHER:PTHR10044:SF106 | EnsemblPlantsGene:SORBI_3004G351300 | SUPFAM:SSF57850 | unigene:Sbi.4359 | UniParc:UPI0001A85CB2 | RefSeq:XP_002453073.1 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:67999806..68005544
Molecular Weight (calculated)
86201.9 Da
IEP (calculated)
5.058
GRAVY (calculated)
-0.897
Length
763 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYHHHHHR MGAAADFRRD LEDLVCDHLG GCFSPPPSSS SSCSAAAGGG AADHEPDGEA ESSAARRRRR ESRLLSRWVA RQAEEVLSSM EREVERRNRE
101: AELLALARLH PVSTLDPSSF LLSSPATPPP PRPQAPSPAA PSSLLQMWRE LEHRRADAHP FDREPTPDNA DRDRERVRQI ARRLTDTADS PTAAAAAATA
201: NGEWLGETER QRVRLVREWV QMASQPRDSR AGVRRDEPAA GADRDRRGEP PRLRGRQARL DVISRMARER QRELQGISGY HVVSEFPRRS RNRIQGLLRG
301: RFLRNGALPV EEERPPSVAA RELGQLRQSH RMPALRSESV ASSQDVSQSD ASVPESVRLL VNDESQQVAD VAFTDTEDTA QTLLENVDLQ EMDADRAEAH
401: SPSIPLDDMV VMQESLTQGD NMRQDETEDD TGFWQSSLDG RLDRWPSDID EGADRTWEDN AEDLHSETVE EDDREHGHLQ EEHDGWHDDE SHGTMENWQD
501: DYQDSTLDTG PIPRTENRFI PPDDDNVYSM ELRELLSRRS VSNLLSNGFG ESLERLIRSY VQRRGHGPLN WNLDAAMPPT NAPNANQEQE RNPETRQFQG
601: PVNRPALVIP PPPLPPRQPL WHRELRHNNW SSRHREWDAI NDLRADMGRL QQGMSSMQRM LEACMDMQLE LQRSVRQEVS AALNRFAGPE GFSMDLSDDG
701: SKCNQVRKGT CCICCDTQID SLLYRCGHMC TCSKCANELV RSGGKCPLCR APIVEVVRAY SVL
101: AELLALARLH PVSTLDPSSF LLSSPATPPP PRPQAPSPAA PSSLLQMWRE LEHRRADAHP FDREPTPDNA DRDRERVRQI ARRLTDTADS PTAAAAAATA
201: NGEWLGETER QRVRLVREWV QMASQPRDSR AGVRRDEPAA GADRDRRGEP PRLRGRQARL DVISRMARER QRELQGISGY HVVSEFPRRS RNRIQGLLRG
301: RFLRNGALPV EEERPPSVAA RELGQLRQSH RMPALRSESV ASSQDVSQSD ASVPESVRLL VNDESQQVAD VAFTDTEDTA QTLLENVDLQ EMDADRAEAH
401: SPSIPLDDMV VMQESLTQGD NMRQDETEDD TGFWQSSLDG RLDRWPSDID EGADRTWEDN AEDLHSETVE EDDREHGHLQ EEHDGWHDDE SHGTMENWQD
501: DYQDSTLDTG PIPRTENRFI PPDDDNVYSM ELRELLSRRS VSNLLSNGFG ESLERLIRSY VQRRGHGPLN WNLDAAMPPT NAPNANQEQE RNPETRQFQG
601: PVNRPALVIP PPPLPPRQPL WHRELRHNNW SSRHREWDAI NDLRADMGRL QQGMSSMQRM LEACMDMQLE LQRSVRQEVS AALNRFAGPE GFSMDLSDDG
701: SKCNQVRKGT CCICCDTQID SLLYRCGHMC TCSKCANELV RSGGKCPLCR APIVEVVRAY SVL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.