Factsheet for AT2G27950.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04520	Canola	cytosol, plastid	50.77	62.83
Bra011990.1-P	Field mustard	nucleus, plastid	50.18	55.1
VIT_06s0061g00860.t01	Wine grape	nucleus, plastid	39.21	40.52
KRH25125	Soybean	nucleus	39.93	39.23
KRH30548	Soybean	nucleus	39.33	38.37
KRH22786	Soybean	nucleus	37.43	36.98
KRH26545	Soybean	nucleus	35.04	36.93
Zm00001d019766_P001	Maize	nucleus	8.58	36.0
GSMUA_Achr1P17370_001	Banana	nucleus	29.44	35.49
GSMUA_Achr1P00380_001	Banana	nucleus	26.7	33.63
AT5G04460.1	Thale cress	nucleus	34.21	33.26
KXG35138	Sorghum	nucleus	27.53	33.0
GSMUA_AchrUn_...	Banana	nucleus	30.27	32.94
GSMUA_Achr8P11220_001	Banana	nucleus	29.44	32.8
Zm00001d019765_P001	Maize	nucleus	14.54	32.62
Solyc11g066500.1.1	Tomato	nucleus, plastid	31.23	32.35
PGSC0003DMT400018447	Potato	nucleus	29.32	32.24
Os09t0570500-01	Rice	nucleus	17.28	32.15
GSMUA_Achr11P...	Banana	nucleus	26.58	31.54
Os02t0823300-01	Rice	nucleus	28.25	31.43
GSMUA_Achr5P12430_001	Banana	nucleus	27.41	31.38
OQU93435	Sorghum	nucleus	23.72	30.47
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	19.9	30.47
EES06049	Sorghum	nucleus	27.53	30.28
PGSC0003DMT400001109	Potato	mitochondrion	30.51	29.63
TraesCS6B01G449800.2	Wheat	nucleus	27.06	29.56
Solyc06g074760.1.1	Tomato	nucleus	26.94	29.5
TraesCS6A01G405400.1	Wheat	nucleus	26.82	29.37
TraesCS6D01G389100.1	Wheat	nucleus	26.7	29.24
GSMUA_Achr2P03990_001	Banana	nucleus	24.43	29.16
Zm00001d027308_P001	Maize	nucleus	23.0	28.85
HORVU6Hr1G092920.1	Barley	cytosol	22.05	28.82
HORVU4Hr1G086680.2	Barley	mitochondrion	14.9	28.74
TraesCS4D01G003000.2	Wheat	nucleus	24.2	28.51
TraesCS4A01G311200.1	Wheat	nucleus	23.36	27.41
Zm00001d051871_P002	Maize	nucleus	27.41	27.38
TraesCS4B01G003100.1	Wheat	nucleus	22.88	27.0
TraesCS4D01G354300.1	Wheat	plastid	22.29	26.38
TraesCS5A01G529500.1	Wheat	plastid	22.41	26.18
AT2G34920.2	Thale cress	nucleus	6.44	8.11
AT5G44690.1	Thale cress	nucleus	6.2	7.85
AT1G30860.1	Thale cress	cytosol	6.67	7.67
AT4G20160.2	Thale cress	cytosol	7.87	5.44

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:817339	ProteinID:AEC08063.1	ProteinID:ANM63239.1	ProteinID:ANM63240.1
ArrayExpress:AT2G27950	EnsemblPlantsGene:AT2G27950	RefSeq:AT2G27950	TAIR:AT2G27950	RefSeq:AT2G27950-TAIR-G	EnsemblPlants:AT2G27950.2
ncoils:Coil	UniProt:F4IHN6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009966	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_001325341.1	RefSeq:NP_001325342.1	RefSeq:NP_180362.3
PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	UniParc:UPI0001E92C84
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Ring/U-Box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IHN6]

Coordinates

chr2:-:11899160..11904062

Molecular Weight (calculated)

94775.6 Da

IEP (calculated)

4.401

GRAVY (calculated)

-0.902

Length

839 amino acids

Sequence
(BLAST)

001: MAIAGLQNIL VIDSSFRRDS EVQATRQREN EGRSSVRASS LLQMWRELED DHVMGHARER DGERRSVSSP SNTMRGNGCD SNISAHDIVR DSVNLGENEL
101: GGWSPTQSHV GSHNSSEDLG PFQSEHFSDL GMGERERVRQ IFREWTSSGT GQHTDSASQA TNSSRAEWLG ETEQERVRII REMVQMNSQQ RPALGDLREE
201: QPIEGANQIE RVLDGIVVNP NSIQNEHARR GIRKLCGRQV WVDMLKMAEM ERQRELEGLM QHHAVSNFAH RNRIQALLRG RFLRNGDNDD KEKPTSSAAT
301: ELGFLRERHT VSELREEFIS RLDRSASGQA SSSHSETSSN AETDHNRGEQ NDLNCLDSIN DADGGSDQNG READNQSSLD EITNSGRCCS RSTSLEERTA
401: RVEGWQRSEI DDFSQRRNDT EVDLNATGCS SSSIHGDEIR YGCQLRETIE IPYEQSLQIS EEIATMGPIN RTTNFQENLG ESINLTVTLE EQTVEQMENE
501: ESDWQLINGA TSAWRDDAEE EADTDVPENF PNQLSQLSSV DEDREANILG ELTEMQPDDD AASLQSTIQD WSEEHSDQDT VSMGRATTFF PPDDGNENNM
601: ELRELSSRRR VSNLLQSGFR ENLSQLIQSY MDRRSQNPVD WEEAETYSDH TIVGEDTEQQ DDAQSGGQEL DAVESPPLTL PSPVIPIQPR WDHDRSHSNW
701: PAHDLHQGIG MDWDSINDLR VDMGRIQQRM DNLQRMLEAC MEMQLELQRS IRQEVSAAMH RSTDQPGPSK DTASYESKWE YVRKGICCVC CESNIDSLLY
801: RCGHMNTCEK CAKKLVEAGG KCPMCQAPVI EVVRAYSIL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.