Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU93435 | Sorghum | nucleus | 55.16 | 56.51 |
| TraesCS5A01G529500.1 | Wheat | plastid | 40.66 | 37.88 |
| TraesCS4D01G354300.1 | Wheat | plastid | 39.76 | 37.52 |
| HORVU4Hr1G086680.2 | Barley | mitochondrion | 24.36 | 37.47 |
| Zm00001d019766_P001 | Maize | nucleus | 10.61 | 35.5 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 37.22 | 33.07 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 32.74 | 32.88 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 33.78 | 30.83 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 39.46 | 30.59 |
| PGSC0003DMT400070376 | Potato | nucleus | 39.01 | 30.21 |
| PGSC0003DMT400043571 | Potato | nucleus | 37.67 | 29.34 |
| Zm00001d051871_P002 | Maize | nucleus | 35.58 | 28.33 |
| Bra034121.1-P | Field mustard | nucleus | 33.63 | 28.12 |
| AT5G04460.1 | Thale cress | nucleus | 36.02 | 27.93 |
| Zm00001d019765_P001 | Maize | nucleus | 15.55 | 27.81 |
| Bra009452.1-P | Field mustard | nucleus | 34.53 | 27.6 |
| Bra029846.1-P | Field mustard | nucleus | 31.84 | 27.55 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 33.18 | 27.34 |
| PGSC0003DMT400018447 | Potato | nucleus | 29.6 | 25.95 |
| AT2G27950.2 | Thale cress | nucleus | 28.85 | 23.0 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.71 | 22.51 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 27.65 | 21.41 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 9.87 | 8.54 |
| Zm00001d006417_P002 | Maize | plastid | 7.47 | 8.52 |
Protein Annotations
| EnsemblPlants:Zm00001d027308_P001 | EnsemblPlants:Zm00001d027308_T001 | EnsemblPlantsGene:Zm00001d027308 | EntrezGene:103630632 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:ONL92718.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000220E1E9 | UniProt:A0A1D6JKL1 |
| MapMan:35.2 | : | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr1:-:2562283..2565147
Molecular Weight (calculated)
74747.2 Da
IEP (calculated)
5.554
GRAVY (calculated)
-0.831
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDNVRAKTR SCAGGETSSH AASRVVIAQQ RAAARRRQQQ ACEQMVLTTL DLDRRDRESE LLALARLHAV SMLDASFLHG GDGGRRRPRS PERALVRRIA
101: REWAAASTTS PSRGAGAGAE EWLGESERER VRSVRERVRM ACQGYHRDEE DEEEEPAPSR LRGRPQARAD VVVTRMAVER QRELQGLSEH RAVSAFAHRG
201: RIQSFLRGRS LRSGRSMNDE RPISGQLRQS HPVSTVREEV RSGAERSITS SHQSALVVAL STPTNPTDNE YDDASATPQQ FAISEDENAT VGYEILTQES
301: VQQDEGSRTE DNVADRSHDF AQEQTGRYSG SSSEQDSHHY SSSYAFPSNN ALQREAETRR GGQEQIGLAW SSRDASGIED GDGDGNTFVH GDDDEEWLVI
401: DSQEPRPNWQ PAGHGFASSR NTNRLRPADG DVYGVELREL LSRRSVSNLL SSGFRESLDQ LIRSYVQRQE HEWNLEGQIP ATTGPGSSRN EDHIEIRIID
501: EQNRGDSDTA PQSSSSALSP ADRTQQRQWA QQTMHHRSEF VDWDAIHILR DELSGVQRGM SSVQQMLEAC MEMQIEMQRS IRQEVSAALN RSLTMRDDEE
601: ETLEGGSQWK LARKGTCCIC CDSQIDSLLY RCGHMCTCSK CASELLHGAG RCPLCRAPII EAIRAYCIL
101: REWAAASTTS PSRGAGAGAE EWLGESERER VRSVRERVRM ACQGYHRDEE DEEEEPAPSR LRGRPQARAD VVVTRMAVER QRELQGLSEH RAVSAFAHRG
201: RIQSFLRGRS LRSGRSMNDE RPISGQLRQS HPVSTVREEV RSGAERSITS SHQSALVVAL STPTNPTDNE YDDASATPQQ FAISEDENAT VGYEILTQES
301: VQQDEGSRTE DNVADRSHDF AQEQTGRYSG SSSEQDSHHY SSSYAFPSNN ALQREAETRR GGQEQIGLAW SSRDASGIED GDGDGNTFVH GDDDEEWLVI
401: DSQEPRPNWQ PAGHGFASSR NTNRLRPADG DVYGVELREL LSRRSVSNLL SSGFRESLDQ LIRSYVQRQE HEWNLEGQIP ATTGPGSSRN EDHIEIRIID
501: EQNRGDSDTA PQSSSSALSP ADRTQQRQWA QQTMHHRSEF VDWDAIHILR DELSGVQRGM SSVQQMLEAC MEMQIEMQRS IRQEVSAALN RSLTMRDDEE
601: ETLEGGSQWK LARKGTCCIC CDSQIDSLLY RCGHMCTCSK CASELLHGAG RCPLCRAPII EAIRAYCIL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.