Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027308_P001 | Maize | nucleus | 56.51 | 55.16 |
| HORVU4Hr1G086680.2 | Barley | mitochondrion | 26.19 | 39.31 |
| TraesCS4D01G354300.1 | Wheat | plastid | 40.28 | 37.09 |
| TraesCS5A01G529500.1 | Wheat | plastid | 40.28 | 36.63 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 34.46 | 33.78 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 21.9 | 33.26 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 37.98 | 32.93 |
| KXG35138 | Sorghum | nucleus | 34.3 | 32.0 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 35.68 | 31.79 |
| EES06049 | Sorghum | nucleus | 37.06 | 31.72 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 40.12 | 30.36 |
| Bra034121.1-P | Field mustard | nucleus | 36.45 | 29.75 |
| PGSC0003DMT400070376 | Potato | nucleus | 39.2 | 29.63 |
| Bra009452.1-P | Field mustard | nucleus | 37.52 | 29.27 |
| Bra029846.1-P | Field mustard | nucleus | 34.61 | 29.24 |
| AT5G04460.1 | Thale cress | nucleus | 38.13 | 28.85 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 35.38 | 28.45 |
| PGSC0003DMT400043571 | Potato | nucleus | 36.45 | 27.71 |
| KRH66429 | Soybean | nucleus | 9.04 | 27.7 |
| CDX71406 | Canola | cytosol | 22.66 | 26.48 |
| PGSC0003DMT400018447 | Potato | nucleus | 30.32 | 25.95 |
| AT2G27950.2 | Thale cress | nucleus | 30.47 | 23.72 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 27.26 | 23.3 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 29.86 | 22.57 |
| EER99396 | Sorghum | plastid | 9.19 | 7.77 |
Protein Annotations
| EnsemblPlants:OQU93435 | EnsemblPlantsGene:SORBI_3001G538932 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 | ProteinID:OQU93435 |
| ProteinID:OQU93435.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000B8B9F23 | UniProt:A0A1Z5SCD9 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr1:+:80152553..80156180
Molecular Weight (calculated)
74394.0 Da
IEP (calculated)
5.064
GRAVY (calculated)
-0.837
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDNIRAKTG GDTSSSAASH AASRIIAQQW ACEQMVLTTL DLDRRDRDSE LLALARLHAV SMLDASFLHG GDGGRGGGRR RARSPERALV RRIAREWAAS
101: ASASPRGRAP GAELEWLGES ERERGYHGEE EEEEEEASGR LLRGRPQARA DVVVTRMAME RQRELQGLSE HRAVSTFAHR GRIQSSLRGR FFHSGRPMND
201: ERSIFVTARE LGHVRHSHPV YRLREEVRSG IESITNDQST LVALSTQTNS IDNEYDSVTP QAVSDDNNHI ENATRDYEIL TQQSVQNEDS HIENNVANSN
301: DAHQTDFAQE QIDRYEDYSD SGSSEQDNDH SSYAFHAPSN NVMQREAETY GGQQSDSPWS RDISGTEDGH DNTFVHRDEE WLIIDSQEPG PNWQLGRSFP
401: SSRNVNRLRP SDDDVYGIEL RELLSRRSVS NLLSSGFRES LDQLIRSYVQ RQEHDWNFEG QRPTTTGLLN EDPIEIRIDE QNRAERDNAP QSSTMLADQT
501: LFPQQRQWHT ELPHHNWSQQ SMHHSEFDWD TIHILRDELI RVQRGMTSMQ QMLEACMEMQ MELQRSIKQE VSAALNRSLT MQDEEILEDG SQWKLARKGM
601: CCICCDNQID SLLYRCGHMC TCSKCASELL HGVGKCPLCR APIIEVIRAY CIM
101: ASASPRGRAP GAELEWLGES ERERGYHGEE EEEEEEASGR LLRGRPQARA DVVVTRMAME RQRELQGLSE HRAVSTFAHR GRIQSSLRGR FFHSGRPMND
201: ERSIFVTARE LGHVRHSHPV YRLREEVRSG IESITNDQST LVALSTQTNS IDNEYDSVTP QAVSDDNNHI ENATRDYEIL TQQSVQNEDS HIENNVANSN
301: DAHQTDFAQE QIDRYEDYSD SGSSEQDNDH SSYAFHAPSN NVMQREAETY GGQQSDSPWS RDISGTEDGH DNTFVHRDEE WLIIDSQEPG PNWQLGRSFP
401: SSRNVNRLRP SDDDVYGIEL RELLSRRSVS NLLSSGFRES LDQLIRSYVQ RQEHDWNFEG QRPTTTGLLN EDPIEIRIDE QNRAERDNAP QSSTMLADQT
501: LFPQQRQWHT ELPHHNWSQQ SMHHSEFDWD TIHILRDELI RVQRGMTSMQ QMLEACMEMQ MELQRSIKQE VSAALNRSLT MQDEEILEDG SQWKLARKGM
601: CCICCDNQID SLLYRCGHMC TCSKCASELL HGVGKCPLCR APIIEVIRAY CIM
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.