Factsheet for AT5G04460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70223	Canola	cytosol	68.48	76.26
CDY44857	Canola	nucleus	67.67	75.16
Bra009452.1-P	Field mustard	nucleus	72.07	74.31
KRG92104	Soybean	nucleus	62.22	63.33
Solyc11g007910.1.1	Tomato	nucleus	61.41	63.25
KRH34682	Soybean	nucleus	61.53	62.54
VIT_13s0019g05390.t01	Wine grape	nucleus	61.88	61.88
PGSC0003DMT400070376	Potato	nucleus	61.53	61.46
PGSC0003DMT400043571	Potato	nucleus	57.59	57.86
Solyc03g071670.1.1	Tomato	nucleus	28.97	55.93
GSMUA_AchrUn_...	Banana	nucleus	45.89	51.36
GSMUA_Achr11P...	Banana	nucleus	39.05	47.67
GSMUA_Achr1P17370_001	Banana	nucleus	38.01	47.13
GSMUA_Achr8P11220_001	Banana	nucleus	41.02	47.01
GSMUA_Achr1P00380_001	Banana	nucleus	35.11	45.5
Zm00001d019766_P001	Maize	nucleus	10.08	43.5
Os09t0570500-01	Rice	nucleus	22.02	42.13
GSMUA_Achr5P12430_001	Banana	nucleus	34.99	41.2
Os02t0823300-01	Rice	nucleus	35.81	40.98
EES06049	Sorghum	nucleus	35.92	40.63
Zm00001d019765_P001	Maize	nucleus	17.38	40.11
KXG35138	Sorghum	nucleus	32.45	40.0
TraesCS6A01G405400.1	Wheat	nucleus	34.99	39.43
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	24.8	39.05
TraesCS6D01G389100.1	Wheat	nucleus	34.65	39.03
TraesCS6B01G449800.2	Wheat	nucleus	34.3	38.54
OQU93435	Sorghum	nucleus	28.85	38.13
TraesCS4D01G003000.2	Wheat	nucleus	31.29	37.92
GSMUA_Achr2P03990_001	Banana	nucleus	30.13	36.98
Zm00001d051871_P002	Maize	nucleus	35.34	36.31
TraesCS4A01G311200.1	Wheat	nucleus	30.01	36.22
Zm00001d027308_P001	Maize	nucleus	27.93	36.02
TraesCS4B01G003100.1	Wheat	nucleus	29.55	35.87
HORVU6Hr1G092920.1	Barley	cytosol	25.72	34.58
AT2G27950.2	Thale cress	nucleus	33.26	34.21
HORVU4Hr1G086680.2	Barley	mitochondrion	17.15	34.02
TraesCS4D01G354300.1	Wheat	plastid	27.81	33.85
TraesCS5A01G529500.1	Wheat	plastid	27.46	33.01
AT2G34920.2	Thale cress	nucleus	8.23	10.66
AT1G30860.1	Thale cress	cytosol	8.81	10.41
AT5G44690.1	Thale cress	nucleus	6.14	8.01
AT4G20160.2	Thale cress	cytosol	9.15	6.51

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:830324	ProteinID:AED90746.1	ProteinID:AED90747.1	ProteinID:ANM69485.1
ProteinID:ANM69486.1	ArrayExpress:AT5G04460	EnsemblPlantsGene:AT5G04460	RefSeq:AT5G04460	TAIR:AT5G04460	RefSeq:AT5G04460-TAIR-G
EnsemblPlants:AT5G04460.1	TAIR:AT5G04460.1	Unigene:At.33121	ncoils:Coil	UniProt:F4JWA1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009966
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083
RefSeq:NP_001190224.1	RefSeq:NP_001318480.1	RefSeq:NP_001331156.1	RefSeq:NP_196066.2	PFAM:PF13920	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50089
PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	SUPFAM:SSF57850	UniParc:UPI0000196BA3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]

Coordinates

chr5:+:1259435..1263937

Molecular Weight (calculated)

99175.1 Da

IEP (calculated)

6.000

GRAVY (calculated)

-1.079

Length

863 amino acids

Sequence
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.