Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06049 | Sorghum | nucleus | 77.74 | 85.58 |
| Os02t0823300-01 | Rice | nucleus | 67.5 | 75.2 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 62.86 | 68.93 |
| TraesCS6A01G405400.1 | Wheat | nucleus | 61.19 | 67.1 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 60.0 | 65.62 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 43.69 | 57.17 |
| Zm00001d019766_P001 | Maize | nucleus | 10.83 | 45.5 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 34.52 | 43.54 |
| Zm00001d019765_P001 | Maize | nucleus | 18.69 | 41.98 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 36.79 | 41.04 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 40.83 | 39.75 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 33.69 | 38.61 |
| PGSC0003DMT400070376 | Potato | nucleus | 38.81 | 37.73 |
| PGSC0003DMT400043571 | Potato | nucleus | 36.79 | 35.97 |
| Bra009452.1-P | Field mustard | nucleus | 35.6 | 35.72 |
| Bra029846.1-P | Field mustard | nucleus | 32.86 | 35.7 |
| Zm00001d027308_P001 | Maize | nucleus | 28.33 | 35.58 |
| AT5G04460.1 | Thale cress | nucleus | 36.31 | 35.34 |
| Bra034121.1-P | Field mustard | nucleus | 32.38 | 34.0 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 32.38 | 33.5 |
| AT2G27950.2 | Thale cress | nucleus | 27.38 | 27.41 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 24.4 | 26.83 |
| PGSC0003DMT400018447 | Potato | nucleus | 24.05 | 26.47 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 26.31 | 25.58 |
| Zm00001d006417_P002 | Maize | plastid | 6.79 | 9.71 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 8.1 | 8.8 |
Protein Annotations
| EnsemblPlants:Zm00001d051871_P002 | EnsemblPlants:Zm00001d051871_T002 | EnsemblPlantsGene:Zm00001d051871 | EntrezGene:103654099 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 |
| PFAM:PF13920 | PFscan:PS50089 | ProteinID:AQK55341.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000842D9EA |
| UniProt:A0A1D6QAJ5 | MapMan:35.2 | : | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr4:-:172954176..172960946
Molecular Weight (calculated)
94822.8 Da
IEP (calculated)
5.058
GRAVY (calculated)
-0.702
Length
840 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYHHHHQR MGAAADFRRD LEDLVCDHLG GCFSPAPSSS SSCSAAAGGG AADHEPDGEA ESSAVRRRRR ESRLLSRWVA RQAEEVLSSM EREVERRNRE
101: AELLALARLH PVSTLDPSSF LLSSTAAPPP PRPQAPSLNA PSSLLQMWRE LEHPRADAAH PFDREPSPDN ADRDRERVRQ IARRLTDTAA AAATATAGGE
201: WLGETERQRV RLVREWVQMA SQPRDSRAGT RRDEPAAGTD RDRRGELEPP RLRGRQARLD VISRMARERQ RELQGISGYH VVSEFPRRSR NRIQGLLRGR
301: FLRNGALEEE RPPSVAAREL GQLRQSHRMP ALRLVSFSII QYNSMVTGPI YFDDSVINYV ITSMCLRAHS VLDGSIVSFP SLLYHRMLER IHCIIYAILI
401: ILMYEVICCT FFRPESIASS QDVSQSDASV VESVRLLDND ESQQGAEVAF TDSEDTTQTV LENVDLQEMG ADGAEAHSPS IPMDDMVMMQ ESLTQGDNMQ
501: QDGTEDDTGF WQTSLDASLN RWPSEIGGGA DRTWEDNAED LHSETMEEDD REHGHLQEEH DGWHDNESHG TMENWQDDYQ DSALDTGPIP RNENRFIPPD
601: DDNVYSMELR ELLSRRSVSN LLSNGFGESL ERLIRSYVQQ RGHGPLNWNL DAAMHPSNGP NANQEQERNP ETQQFQAPVN RPALVIPPPP LPPRQPLWHR
701: ELRHNNWNSR HREWDAINDL RADMGRLQQG MSSMQRMLEA CMDMQLELQR SVRQEVSAAL NRFAGPEGLS MDLCDDGSKW NQVRTGTCCV CCDSQIDSLL
801: YRCGHMCTCS KCANELVRSG GKCPLCRAPI VEVVRAYSVM
101: AELLALARLH PVSTLDPSSF LLSSTAAPPP PRPQAPSLNA PSSLLQMWRE LEHPRADAAH PFDREPSPDN ADRDRERVRQ IARRLTDTAA AAATATAGGE
201: WLGETERQRV RLVREWVQMA SQPRDSRAGT RRDEPAAGTD RDRRGELEPP RLRGRQARLD VISRMARERQ RELQGISGYH VVSEFPRRSR NRIQGLLRGR
301: FLRNGALEEE RPPSVAAREL GQLRQSHRMP ALRLVSFSII QYNSMVTGPI YFDDSVINYV ITSMCLRAHS VLDGSIVSFP SLLYHRMLER IHCIIYAILI
401: ILMYEVICCT FFRPESIASS QDVSQSDASV VESVRLLDND ESQQGAEVAF TDSEDTTQTV LENVDLQEMG ADGAEAHSPS IPMDDMVMMQ ESLTQGDNMQ
501: QDGTEDDTGF WQTSLDASLN RWPSEIGGGA DRTWEDNAED LHSETMEEDD REHGHLQEEH DGWHDNESHG TMENWQDDYQ DSALDTGPIP RNENRFIPPD
601: DDNVYSMELR ELLSRRSVSN LLSNGFGESL ERLIRSYVQQ RGHGPLNWNL DAAMHPSNGP NANQEQERNP ETQQFQAPVN RPALVIPPPP LPPRQPLWHR
701: ELRHNNWNSR HREWDAINDL RADMGRLQQG MSSMQRMLEA CMDMQLELQR SVRQEVSAAL NRFAGPEGLS MDLCDDGSKW NQVRTGTCCV CCDSQIDSLL
801: YRCGHMCTCS KCANELVRSG GKCPLCRAPI VEVVRAYSVM
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.