Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06049 | Sorghum | nucleus | 78.78 | 77.85 |
| TraesCS6A01G405400.1 | Wheat | nucleus | 75.46 | 74.28 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 74.01 | 72.66 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 72.41 | 71.28 |
| Zm00001d051871_P002 | Maize | nucleus | 75.2 | 67.5 |
| HORVU6Hr1G092920.1 | Barley | cytosol | 54.91 | 64.49 |
| Os09t0570500-01 | Rice | nucleus | 28.25 | 47.23 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 38.86 | 43.99 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 41.25 | 41.3 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 45.49 | 39.75 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 38.59 | 39.7 |
| PGSC0003DMT400070376 | Potato | nucleus | 43.9 | 38.31 |
| PGSC0003DMT400043571 | Potato | nucleus | 42.31 | 37.14 |
| Bra009452.1-P | Field mustard | nucleus | 40.85 | 36.8 |
| Bra029846.1-P | Field mustard | nucleus | 36.74 | 35.83 |
| AT5G04460.1 | Thale cress | nucleus | 40.98 | 35.81 |
| Bra034121.1-P | Field mustard | nucleus | 37.53 | 35.38 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 36.21 | 33.62 |
| AT2G27950.2 | Thale cress | nucleus | 31.43 | 28.25 |
| PGSC0003DMT400018447 | Potato | nucleus | 28.12 | 27.79 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 27.98 | 27.62 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 29.58 | 25.81 |
| Os03t0107500-00 | Rice | plasma membrane | 4.77 | 9.86 |
| Os07t0499800-01 | Rice | nucleus | 8.49 | 8.51 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:4331196 | ProteinID:BAD22922.1 | ProteinID:BAF10482.1 | ProteinID:BAS81658.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0016874 |
| GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlantsGene:Os02g0823300 | EnsemblPlants:Os02t0823300-01 | PFAM:PF13920 |
| PFscan:PS50089 | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | UniProt:Q6K9X4 | SUPFAM:SSF57850 | UniParc:UPI00003B04AE |
| RefSeq:XP_015627139.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING finger proteinSimilar to Neuralized protein. (Os02t0823300-01);Zinc finger, RING-type domain containing protein. (Os02t0823300-02)
Coordinates
chr2:+:35362874..35368879
Molecular Weight (calculated)
85405.0 Da
IEP (calculated)
4.929
GRAVY (calculated)
-0.873
Length
754 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYHHRMGA AADFRRDLED LVCDHLGGCF SPTSSSSSCS AAGGGVAAGH QPDEEPESSA ARRRRRESRL LSRWVARQAE EVLSSMEREV ERRNREAELL
101: ALARLHPVST LDPSSFLLSS PTAPPPRPQA PSPTAPPSLL QMWRELEHRR SDADQPFDRE PSPDTADRER VRQIARRLTA NTDVPTAAAA AATTGEWLGE
201: TERQRVRLVR EWVQMASQPR DSRVASRRDD TAAGERERRG EPPRLRGRQA RLDVITRMAR ERQRELQGIS GYHIVSEFPH RSRNRIQGLL RGRFLRNVVL
301: PVEEEERPPS VAARELGQLR QSHRVSTLRS ESAVSSEDVS RFDSSVAESV GVLGSDEPQQ GAEVRALTGT ENTTQIMLED VGLQEADAEN AAIESPSVAL
401: DNMVEMHETQ VDNRLQDEAG RDARFWQPSL DDSLDRWPNE TAEDAERNWE DNAEELHSET MEDDAREHDH LQDEHDEWHD DESHGTENWQ DDFQDSPLDM
501: GPIPRTENRF IPPDDDNVYS MELRELLSRR SVSNLLSNGF GESLERLIRS YVQRRGRGPL NWNLDAAIPS VNSPNENQEQ ERNAETRQFQ APVNRPALVI
601: PPPPLPPRQP LWHRELRHNN WSTRHREWDA INDLKADMGR LQQGMSSIQR MLEACMDMQL ELQRSVRQEV SAALNRFAGP EGYPTDLSDD GSKWDQVRKG
701: TCCVCCDAQI DSLLYRCGHM CTCSKCANEL IRSGGKCPLC RAPIAEVVRA YSVM
101: ALARLHPVST LDPSSFLLSS PTAPPPRPQA PSPTAPPSLL QMWRELEHRR SDADQPFDRE PSPDTADRER VRQIARRLTA NTDVPTAAAA AATTGEWLGE
201: TERQRVRLVR EWVQMASQPR DSRVASRRDD TAAGERERRG EPPRLRGRQA RLDVITRMAR ERQRELQGIS GYHIVSEFPH RSRNRIQGLL RGRFLRNVVL
301: PVEEEERPPS VAARELGQLR QSHRVSTLRS ESAVSSEDVS RFDSSVAESV GVLGSDEPQQ GAEVRALTGT ENTTQIMLED VGLQEADAEN AAIESPSVAL
401: DNMVEMHETQ VDNRLQDEAG RDARFWQPSL DDSLDRWPNE TAEDAERNWE DNAEELHSET MEDDAREHDH LQDEHDEWHD DESHGTENWQ DDFQDSPLDM
501: GPIPRTENRF IPPDDDNVYS MELRELLSRR SVSNLLSNGF GESLERLIRS YVQRRGRGPL NWNLDAAIPS VNSPNENQEQ ERNAETRQFQ APVNRPALVI
601: PPPPLPPRQP LWHRELRHNN WSTRHREWDA INDLKADMGR LQQGMSSIQR MLEACMDMQL ELQRSVRQEV SAALNRFAGP EGYPTDLSDD GSKWDQVRKG
701: TCCVCCDAQI DSLLYRCGHM CTCSKCANEL IRSGGKCPLC RAPIAEVVRA YSVM
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.