Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G405400.1 | Wheat | nucleus | 82.4 | 69.06 |
| TraesCS6B01G449800.2 | Wheat | nucleus | 79.91 | 66.8 |
| TraesCS6D01G389100.1 | Wheat | nucleus | 76.17 | 63.84 |
| Os02t0823300-01 | Rice | nucleus | 64.49 | 54.91 |
| EES06049 | Sorghum | nucleus | 62.77 | 52.82 |
| Zm00001d051871_P002 | Maize | nucleus | 57.17 | 43.69 |
| HORVU4Hr1G000090.6 | Barley | cytosol, mitochondrion, nucleus | 34.74 | 40.69 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 24.77 | 36.98 |
| GSMUA_Achr1P00380_001 | Banana | nucleus | 36.76 | 35.44 |
| GSMUA_Achr5P12430_001 | Banana | nucleus | 37.07 | 32.47 |
| HORVU4Hr1G086680.2 | Barley | mitochondrion | 21.81 | 32.18 |
| KRH66429 | Soybean | nucleus | 10.44 | 31.46 |
| GSMUA_Achr8P11220_001 | Banana | nucleus | 34.89 | 29.75 |
| VIT_13s0019g05390.t01 | Wine grape | nucleus | 38.94 | 28.97 |
| PGSC0003DMT400070376 | Potato | nucleus | 37.38 | 27.78 |
| VIT_06s0061g00860.t01 | Wine grape | nucleus, plastid | 33.96 | 26.85 |
| Bra009452.1-P | Field mustard | nucleus | 34.58 | 26.52 |
| Bra029846.1-P | Field mustard | nucleus | 31.62 | 26.26 |
| PGSC0003DMT400043571 | Potato | nucleus | 35.05 | 26.19 |
| Bra034121.1-P | Field mustard | nucleus | 32.09 | 25.75 |
| AT5G04460.1 | Thale cress | nucleus | 34.58 | 25.72 |
| CDX71406 | Canola | cytosol | 21.96 | 25.22 |
| AT2G27950.2 | Thale cress | nucleus | 28.82 | 22.05 |
| PGSC0003DMT400018447 | Potato | nucleus | 26.17 | 22.02 |
| PGSC0003DMT400001109 | Potato | mitochondrion | 29.28 | 21.76 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 25.08 | 21.07 |
| HORVU2Hr1G048520.1 | Barley | plastid | 7.32 | 7.31 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G092920.1 | EnsemblPlantsGene:HORVU6Hr1G092920 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF106 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000B464BEF | UniProt:A0A287V7R7 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr6H:+:578500494..578505635
Molecular Weight (calculated)
62024.0 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.706
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVQM
101: ASQPRDPRAA SRREEPTAAE RERRGEPPRL RGRQARTDVI TRMSRERQRE LQGLSGYHIV SQFPQRSRSR IQGLLRVRFL RNAVLPVEEE RQPSVAAREL
201: GQLRQSHRVS TLRSESAVSS QDVSPSDAPV AENVPLLDND ETEQGADFGH LTVSEDVAQT TPENVGLQED NVDVAEAESP ATTSVDIVDM QVSQVDNGLQ
301: DETERETIFW QPSLDVRLDR WPNETADNSD RNWEDNAEEL HSEIVEDDER ENENLQDEHD VWHDDESHGT EENWQDDFQD AALDTGPIPR IENSFNLRDE
401: ANLHNMELRE LLSRRSVSNL LSNGFGDSLE QLIRSYVQRR GHAPLNWNLD TAMPTANAPN GNQELVRNAE NRQFQGPVNR PALVIPPPPL PPRQPLWHRD
501: LRHNTWSSRH RVHQELDAIN DLKADMNRLQ QGMSSMQRML EACMDMQLEL QRSVRQEVSA ALSRFPGPEG MFLDLHDDGT RWDQVRKGTC CVCCDTQIDS
601: LLYRCGHMCT CSKCANELVR SGGKCPLCRA PIVEVVRAYA VL
101: ASQPRDPRAA SRREEPTAAE RERRGEPPRL RGRQARTDVI TRMSRERQRE LQGLSGYHIV SQFPQRSRSR IQGLLRVRFL RNAVLPVEEE RQPSVAAREL
201: GQLRQSHRVS TLRSESAVSS QDVSPSDAPV AENVPLLDND ETEQGADFGH LTVSEDVAQT TPENVGLQED NVDVAEAESP ATTSVDIVDM QVSQVDNGLQ
301: DETERETIFW QPSLDVRLDR WPNETADNSD RNWEDNAEEL HSEIVEDDER ENENLQDEHD VWHDDESHGT EENWQDDFQD AALDTGPIPR IENSFNLRDE
401: ANLHNMELRE LLSRRSVSNL LSNGFGDSLE QLIRSYVQRR GHAPLNWNLD TAMPTANAPN GNQELVRNAE NRQFQGPVNR PALVIPPPPL PPRQPLWHRD
501: LRHNTWSSRH RVHQELDAIN DLKADMNRLQ QGMSSMQRML EACMDMQLEL QRSVRQEVSA ALSRFPGPEG MFLDLHDDGT RWDQVRKGTC CVCCDTQIDS
601: LLYRCGHMCT CSKCANELVR SGGKCPLCRA PIVEVVRAYA VL
001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.