Factsheet for Bra029846.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00948	Canola	cytosol	80.08	85.85
Bra034121.1-P	Field mustard	nucleus	67.14	64.88
Bra009452.1-P	Field mustard	nucleus	55.24	51.02
KRG92104	Soybean	nucleus	54.59	49.76
KRH34682	Soybean	nucleus	54.33	49.47
Solyc11g007910.1.1	Tomato	nucleus	53.3	49.16
VIT_13s0019g05390.t01	Wine grape	nucleus	54.59	48.9
PGSC0003DMT400070376	Potato	nucleus	54.08	48.38
Solyc03g071670.1.1	Tomato	nucleus	26.65	46.09
PGSC0003DMT400043571	Potato	nucleus	51.1	45.98
GSMUA_AchrUn_...	Banana	nucleus	43.47	43.58
GSMUA_Achr8P11220_001	Banana	nucleus	41.4	42.5
Zm00001d019766_P001	Maize	nucleus	10.48	40.5
GSMUA_Achr11P...	Banana	nucleus	36.74	40.17
GSMUA_Achr1P17370_001	Banana	nucleus	35.45	39.37
GSMUA_Achr1P00380_001	Banana	nucleus	33.64	39.04
Os09t0570500-01	Rice	nucleus	22.25	38.14
Os02t0823300-01	Rice	nucleus	35.83	36.74
EES06049	Sorghum	nucleus	35.7	36.17
TraesCS6A01G405400.1	Wheat	nucleus	35.7	36.03
TraesCS6D01G389100.1	Wheat	nucleus	35.45	35.77
GSMUA_Achr5P12430_001	Banana	nucleus	33.64	35.47
KXG35138	Sorghum	nucleus	32.08	35.43
TraesCS6B01G449800.2	Wheat	nucleus	35.19	35.42
HORVU4Hr1G000090.6	Barley	cytosol, mitochondrion, nucleus	25.1	35.4
OQU93435	Sorghum	nucleus	29.24	34.61
TraesCS4D01G003000.2	Wheat	nucleus	31.82	34.55
Zm00001d019765_P001	Maize	nucleus	16.17	33.42
GSMUA_Achr2P03990_001	Banana	nucleus	30.27	33.29
Zm00001d051871_P002	Maize	nucleus	35.7	32.86
TraesCS4B01G003100.1	Wheat	nucleus	30.14	32.77
TraesCS4A01G311200.1	Wheat	nucleus	30.01	32.45
Zm00001d027308_P001	Maize	nucleus	27.55	31.84
HORVU6Hr1G092920.1	Barley	cytosol	26.26	31.62
Bra011990.1-P	Field mustard	nucleus, plastid	30.53	30.89
HORVU4Hr1G086680.2	Barley	mitochondrion	17.08	30.34
TraesCS4D01G354300.1	Wheat	plastid	27.55	30.04
TraesCS5A01G529500.1	Wheat	plastid	26.78	28.83
Bra021939.1-P	Field mustard	nucleus, plastid	8.54	10.59
Bra005381.1-P	Field mustard	nucleus	8.28	9.88
Bra023148.1-P	Field mustard	nucleus	8.41	9.22
Bra039871.1-P	Field mustard	nucleus	8.02	8.83
Bra013447.1-P	Field mustard	nucleus	9.31	5.83

Protein Annotations

EnsemblPlants:Bra029846.1	EnsemblPlants:Bra029846.1-P	EnsemblPlantsGene:Bra029846	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR10044	PANTHER:PTHR10044:SF106	PFAM:PF13920
PFscan:PS50089	SEG:seg	SUPFAM:SSF57850	UniParc:UPI000254794B	UniProt:M4EM26	MapMan:35.2

Description

AT5G04460 (E=1e-167) | protein binding / zinc ion binding

Coordinates

chrA05:-:22005964..22009201

Molecular Weight (calculated)

89274.3 Da

IEP (calculated)

6.417

GRAVY (calculated)

-1.073

Length

773 amino acids

Sequence
(BLAST)

001: MDRRFEDFNE GCISFESCSS VHNPDNDHDQ EDEHLLRRRR RSDLEGDDIA ESSAARRRQS RILSRWAARQ AQEMITTIER RNRESELIAI AGLHAVSTLD
101: SSFLREETHS PPLRRERPRT QASEIFQMWR ELEDEHVHNR ARERLRPRQI SANASVSGNN ESLRGSSESE NGYRSSSREQ SPDLGDVESE RVRQSVRDYV
201: SNVRRRDDNR RGELVGDTER ERVRVIRERM QMTSQQRGAR ASRREDQQRS LGSQDDRPQV QRVGEGLAVE NEEGQREDTR RDLRRLRGRH AFVDLLMRIE
301: QERQRELQGL LDHRAVSDFS HRNRIQLLLR RRFLRNEPRT EEVRAPSMAA SELRQLRDRH TVSGLREGVS DRLESNTNVD NINTSRINRT IAANTTEDSQ
401: RINERLSSSR QGNDTPLLPN DLGRSGSNRT TADRNWEEHT SQESVCPEVF RTDESRNLLE ATLSQLSERD NGNAVINEQE NSVDDLHQDG TGNSDATVLI
501: EDQSVWPADN TRQSDGNWPE TRFGALRSRR VVPMRRVNRL HLPNDDNVYN IELRELLSRR NVSNFLRSGF RENLDQLIQS YVERRVDWEA ISDSQEHHTE
601: QQRFLQDEDQ LDGINQTLPT PPVPPPQPIR HHTNYARHSL HRSELGWEMM NDLRGEMARL QQGMSHMQRN LETCMDMQSE LQRSVRQEVS AALNRSPGDQ
701: GLGAGTSEDG SRWGHVRNGT CCVCCDTDID ALLYRCGHMC TCSNCGNELV RTGGKCPLCR APILEVIRAY TVA

Best Arabidopsis Sequence Match ( AT5G04460.6 )
(BLAST)

001: MTSIQPLLQK SESRDDVRAE FERGLEEFMR GHLDECISFG SCSSVHNPED EDNEDDQLVR RRRRSELEGD NLAESSAARR RQSQILSRWA ARQAQEMITT
101: IERRNRESEL IALAGLQTVS MLDSSFLRES QSQSPSSRRQ GAASERPNTQ ASGILQMWRE LEDEHVLNRA RERVRERLRQ QRSVESNTNL SSSIASESQL
201: SENNGSLRDS SESENDFGSW SHDRNEHGDN NNTSSREQSP DLGDGERERV RHIARGWMDS RINDHSSNVR QRDDNRRPEW LGDTERERVR IIREWMQMTS
301: QQRGGARATP REDQRSTSEA DRNHDAAPQV DRVRVGLAVN HEEGQPPHVR RDLRRVRGRQ ALLDLLMRAE RERQRELQGL LEHRAVSDFA HRNRIQSLLR
401: GRFLRNERPT VPERTPSMAS RELLQLRERQ TVSGLREGFH NGRENIVHEN TSNTDNDNSN TSTNALAIAI TAGNSQRVTD ESSTSSRQGN DSPILPDNSE
501: SNLANADRDW EEDTNQRRIW QENVPVDERP NLEQTTLTQF DGYDNTDINR DETSVSDMHR EASGFADDEY RTQEAHGVWH ENSSRQSDGN WPGTRSEALR
601: SRRVVQLRRL NRFHPPEDDN VYSMELRELL SRRSVSNLLH SGFRESLDQL IQSYAERRGH THVDWDLHAN LQTAIPDSPE RDTDHQVFVR NDNQLNGING
701: SQLLPTPPAP PPQPIWHQDL HHTSWSRHSM HRSEIEWEVM NDLRGDVARL QQGMSQMQRM LEACMDMQLE LQRSVRQEVS AALNRSAGDQ GMSAETSEDG
801: SRWSHVSKGT CCVCCDNHID ALLYRCGHMC TCSKCANELV RNGGKCPLCR APIIEVIRAY SIL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.