Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78978 | Canola | cytosol | 74.76 | 81.63 |
| CDY50063 | Canola | cytosol | 50.32 | 56.6 |
| AT4G20160.2 | Thale cress | cytosol | 30.91 | 31.49 |
| Bra005381.1-P | Field mustard | nucleus | 16.18 | 30.86 |
| Bra023148.1-P | Field mustard | nucleus | 16.83 | 29.5 |
| Bra039871.1-P | Field mustard | nucleus | 15.53 | 27.35 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 13.67 | 27.13 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 13.84 | 23.46 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 9.63 | 21.92 |
| KRH37161 | Soybean | nucleus | 15.78 | 21.15 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 15.45 | 20.28 |
| KRH12155 | Soybean | nucleus | 14.81 | 19.96 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 15.78 | 19.78 |
| PGSC0003DMT400035458 | Potato | nucleus | 15.13 | 18.07 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 10.6 | 17.73 |
| HORVU2Hr1G048520.1 | Barley | plastid | 9.06 | 17.42 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 9.95 | 16.92 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 9.87 | 16.62 |
| Os07t0499800-01 | Rice | nucleus | 10.03 | 16.49 |
| Solyc02g082100.2.1 | Tomato | vacuole | 14.08 | 16.14 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 9.87 | 16.12 |
| EER99396 | Sorghum | plastid | 9.79 | 15.67 |
| Zm00001d006417_P002 | Maize | plastid | 7.36 | 15.5 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 9.22 | 14.75 |
| Bra034121.1-P | Field mustard | nucleus | 6.15 | 9.5 |
| Bra029846.1-P | Field mustard | nucleus | 5.83 | 9.31 |
| Bra011990.1-P | Field mustard | nucleus, plastid | 5.42 | 8.77 |
| Bra009452.1-P | Field mustard | nucleus | 5.66 | 8.36 |
| Os03t0107500-00 | Rice | plasma membrane | 1.29 | 4.38 |
Protein Annotations
| EnsemblPlants:Bra013447.1 | EnsemblPlants:Bra013447.1-P | EnsemblPlantsGene:Bra013447 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI00025469EC | UniProt:M4DAD7 | MapMan:35.2 |
Description
AT4G20160 (E=2e-109) | LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: protein binding / zinc ion binding (TAIR:AT1G30860.1); Has 56595 Blast hits to 33217 proteins in 1313 species: Archae - 191; Bacteria - 4343; Metazoa - 25320; Fungi - 4691; Plants - 1995; Viruses - 268; Other Eukaryotes - 19787 (source: NCBI BLink).
Coordinates
chrA01:+:5711723..5715936
Molecular Weight (calculated)
140035.0 Da
IEP (calculated)
4.917
GRAVY (calculated)
-1.124
Length
1236 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMTSDVETSQ AFNYVLSPHE RCIRGDNNNN KKTKNNNSNN NNVRNIHVAF EKNLNVFVRD HLDNVTVASG ENGDESTKAV PECSSNKSSV LKTEEPRLSS
0101: SSIGSDPDPN LPHPGQQDKN TSRKETMPAS SLVQIWEART TSSNQNQTQT DSRTSSSGSN VLENSESLIE EPVKEYEPIQ PVQEGKNEEH KEEEIESDSQ
0201: SVSGEKEREG VRVMDIIRKL SSDTETTTGN NDNGSSSNEN GKEVQTTTTE TRTFPQVSCS PRIRGRQAFA DLLIQMMRDR EKELASLLDR HCVSKFTHRG
0301: RIQSTLRIRC YERCIAIQDK YRSKSWAPGS DLNRAGGSDL NRSPRGSGVM HLLKEKNKTN SDNISSSVSS RSRVMEKDPQ KSLEKKAVEE IMEKIDVKEV
0401: REVVSAVETA KKAVLSELVE NKNGSKKSTG ETIKKESAER KGEKRETMAQ EVVSAVETAK KAVLSEIVEN KNGLKKPTGE TIKKEVAERR GEKRETMEKP
0501: VAKEGLERRG EKRETMEKPV AREGHKGRGD KETVKKAVLS ESAEGKSGLK KPIGETLQKE TTEGRGDKGE TKEKAIAKEN VQGNVLVGIA EKVNRWNSEE
0601: KLNRSRWTEK GKTETKANTE RVDKNDVLED AKRTNNVQSG EKSNTTCEFP EKEVRRKEKE DCVSVETKSI EIGDPQQGTA QEEEKVVQET TTRNNKNGLK
0701: KPTEKESKEG REMEESVEGN TFMGIAEKVK MWNSKYKKSR RRYSMDRGKG KTGKPNTERN EVLQEASRRI INLKTEERSI TTSKEKVVGT QEIKDKRESS
0801: REIMQCEPEE KGRRMKEEEL CSEEAKSKDI TEVKIMSSQE VIIPAKESAC HGSPERGKEL SASLQGEEMF ILQNLEDKST KETDGNNFQE NIIEEDSREK
0901: AKEKNASQQD EEVKEVAIEF ANDWDEKEDD DDDDDDYEDY GDFDDYIGEI STDWIYDVSR PRSYWEELRK ERYLEVLNTE SDKKDICNLI QSRTVSNFLT
1001: SDLRQKIDNL MTSLVQNHLG VPINQEEDEE EEKEEWVEEC SARNQEYNET EEEPEKTNLE AASDTILEAD HDACSQSSER SSTLMISWSF RDQDIDKDNE
1101: PTASLSLPEP SSATSQTTQE MQMISDLREQ MEQLQREMLE LRNTVKSCTD MQLHFQKSST QDSCRSGSSA EQGVETKNPL KRKCCVCSEM PVESLLYRCG
1201: HMCTCLKCAH ELQWSSKKCP ICMAPIVDVV RAFLDA
0101: SSIGSDPDPN LPHPGQQDKN TSRKETMPAS SLVQIWEART TSSNQNQTQT DSRTSSSGSN VLENSESLIE EPVKEYEPIQ PVQEGKNEEH KEEEIESDSQ
0201: SVSGEKEREG VRVMDIIRKL SSDTETTTGN NDNGSSSNEN GKEVQTTTTE TRTFPQVSCS PRIRGRQAFA DLLIQMMRDR EKELASLLDR HCVSKFTHRG
0301: RIQSTLRIRC YERCIAIQDK YRSKSWAPGS DLNRAGGSDL NRSPRGSGVM HLLKEKNKTN SDNISSSVSS RSRVMEKDPQ KSLEKKAVEE IMEKIDVKEV
0401: REVVSAVETA KKAVLSELVE NKNGSKKSTG ETIKKESAER KGEKRETMAQ EVVSAVETAK KAVLSEIVEN KNGLKKPTGE TIKKEVAERR GEKRETMEKP
0501: VAKEGLERRG EKRETMEKPV AREGHKGRGD KETVKKAVLS ESAEGKSGLK KPIGETLQKE TTEGRGDKGE TKEKAIAKEN VQGNVLVGIA EKVNRWNSEE
0601: KLNRSRWTEK GKTETKANTE RVDKNDVLED AKRTNNVQSG EKSNTTCEFP EKEVRRKEKE DCVSVETKSI EIGDPQQGTA QEEEKVVQET TTRNNKNGLK
0701: KPTEKESKEG REMEESVEGN TFMGIAEKVK MWNSKYKKSR RRYSMDRGKG KTGKPNTERN EVLQEASRRI INLKTEERSI TTSKEKVVGT QEIKDKRESS
0801: REIMQCEPEE KGRRMKEEEL CSEEAKSKDI TEVKIMSSQE VIIPAKESAC HGSPERGKEL SASLQGEEMF ILQNLEDKST KETDGNNFQE NIIEEDSREK
0901: AKEKNASQQD EEVKEVAIEF ANDWDEKEDD DDDDDDYEDY GDFDDYIGEI STDWIYDVSR PRSYWEELRK ERYLEVLNTE SDKKDICNLI QSRTVSNFLT
1001: SDLRQKIDNL MTSLVQNHLG VPINQEEDEE EEKEEWVEEC SARNQEYNET EEEPEKTNLE AASDTILEAD HDACSQSSER SSTLMISWSF RDQDIDKDNE
1101: PTASLSLPEP SSATSQTTQE MQMISDLREQ MEQLQREMLE LRNTVKSCTD MQLHFQKSST QDSCRSGSSA EQGVETKNPL KRKCCVCSEM PVESLLYRCG
1201: HMCTCLKCAH ELQWSSKKCP ICMAPIVDVV RAFLDA
0001: MASSEVEMSS CQTFNCVLSR PHERCTQRDN NTNNNKKKNN NNNNVRNIHV AAFEKNLNVF VRDHLENCSV SVDDVVDDSI KAVPECSSNK SSVSDHRLSK
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRCGHMCTC LKCAHELQWS SKKCPICMAP
1201: IVDVVRAFLD S
0101: TEESRQDVPS SSSSLGSDSD PNSGQPENPS RNAASSLVQI WEARTTQQPP SSNQSLIDSR TSSMGSNALE NSESLESVKE SQMIQPIEEC NNEEEEEEIE
0201: CAPPPLESGE KDREGVRVMD IIRKLSNDSE TITNNDNGSS GNDNSKEVQT TEARSFPQVA CSPRIRGRQA LADLLVQMTR DREKDLACLR ERHCVSKFTN
0301: RGRIQSTLRI RCYERCLAIQ GRHRSKSTSA GSDSNRSSRG SGVMHLLREK YKANSENIET GASTSHASTR GRIMDKDPHK ATEKKVLQET IEKSGVKEIK
0401: EVVSAVENAK KGVLSEISEN RNGLKKLAGE TIQKETVEGK GEKRETKEKV ISKESLEGKG EKRESTKEKA IAKESVAEKA LVGIAEKVNL WNSDEKMNRR
0501: KVVEKGKTEG NTNTERVERN DVLEEATRRI LSVESAERSS TTTSKETMTR CEVAEKVVKG KKKEDFVSLE SNKSKEVEDG NIKPQGVTTQ ADSCLRKPAI
0601: EEKVLQETTV KSDLKKPTEK ESREERREIE EEESTSMGIA EKVNLWNSKE KKNRRKAMEK GKGKTEGKAI TETNELLQEA SRRISNVETA ERSIDTSWIT
0701: VVKVVGDRVI MDKRKSSGET TRSAEIGGGK KEEDLASVEA KSKDVIEDKN MNPQAVIHGS KERDKERNSS QNGEETLSLR NSEAKSTKEI ERQEVTQEEK
0801: SVSHGSREKD KERNSLQYGE KMCFLRNSEA KSTKEIERNK SQEVSQGEES ASHGSRESAK EKNSSQQDDE TSTHRNPNDK KGIKEPEDEE SKKVEREETG
0901: ENVEEASVEF VNDWDGNEME EEEEEEYGDY FNGDDDWIHD ISRPRSYWED LRKERYLEVL NTESEKKDIC NLIERRTVSN FLTSDLRQKI DNLMITRVQS
1001: HIGVPLNQIE EGDEYEEEWE VECSARNEED NETEEEPEKT NLEAPSDVCS QSSARSSTMM SWNFRDQDID KDNEPTTSLS LPEPLVPTNQ STQDMQTISD
1101: LKEQMEQLQR EMLELRNTVK SCIDMQLHFQ KSVTQDLSRS GSSAEQRVDP KKDPLKRKCC VCSEMPVDSL LYRCGHMCTC LKCAHELQWS SKKCPICMAP
1201: IVDVVRAFLD S
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.