Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035458 | Potato | nucleus | 68.46 | 71.3 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 25.79 | 29.51 |
| AT2G34920.2 | Thale cress | nucleus | 17.16 | 27.78 |
| CDY31650 | Canola | nucleus, plastid | 15.4 | 25.78 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 17.35 | 25.65 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 12.89 | 25.6 |
| CDY02344 | Canola | cytosol | 16.33 | 25.58 |
| Bra005381.1-P | Field mustard | nucleus | 15.31 | 25.46 |
| CDY52188 | Canola | nucleus | 16.05 | 25.26 |
| CDY12454 | Canola | nucleus | 14.84 | 24.81 |
| Bra023148.1-P | Field mustard | nucleus | 16.05 | 24.54 |
| Bra039871.1-P | Field mustard | nucleus | 15.96 | 24.5 |
| AT1G30860.1 | Thale cress | cytosol | 16.42 | 24.25 |
| KRH37161 | Soybean | nucleus | 19.67 | 22.99 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 13.08 | 22.63 |
| CDY09519 | Canola | nucleus | 15.03 | 22.59 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 13.91 | 22.16 |
| KRH12155 | Soybean | nucleus | 18.65 | 21.92 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 13.64 | 20.22 |
| EER99396 | Sorghum | plastid | 14.19 | 19.82 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 14.19 | 19.79 |
| TraesCS2A01G229600.2 | Wheat | nucleus, plastid | 13.54 | 19.76 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 13.08 | 19.21 |
| HORVU2Hr1G048520.1 | Barley | plastid | 11.32 | 18.97 |
| CDX96975 | Canola | cytosol | 12.06 | 18.92 |
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 13.27 | 18.89 |
| Zm00001d006417_P002 | Maize | plastid | 10.02 | 18.4 |
| Os07t0499800-01 | Rice | nucleus | 12.43 | 17.82 |
| CDY50063 | Canola | cytosol | 16.98 | 16.65 |
| AT4G20160.2 | Thale cress | cytosol | 17.9 | 15.91 |
| AT5G44690.1 | Thale cress | nucleus | 9.74 | 15.86 |
| CDX78978 | Canola | cytosol | 16.6 | 15.81 |
| CDY14941 | Canola | nucleus | 8.35 | 14.49 |
| Bra013447.1-P | Field mustard | nucleus | 16.14 | 14.08 |
| Solyc03g071670.1.1 | Tomato | nucleus | 5.1 | 12.3 |
| Solyc11g007910.1.1 | Tomato | nucleus | 6.4 | 8.23 |
| Solyc06g074760.1.1 | Tomato | nucleus | 5.47 | 7.7 |
| Solyc11g066500.1.1 | Tomato | nucleus, plastid | 5.66 | 7.53 |
| Solyc03g071680.1.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 1.76 | 4.42 |
| Os03t0107500-00 | Rice | plasma membrane | 1.21 | 3.56 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009966 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | UniProt:K4BA80 | PFAM:PF13920 | PFscan:PS50089 |
| PANTHER:PTHR10044 | PANTHER:PTHR10044:SF103 | SUPFAM:SSF57850 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc02g082100.2 | EnsemblPlants:Solyc02g082100.2.1 |
| UniParc:UPI0002767D1C | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2:+:45820648..45826303
Molecular Weight (calculated)
122036.0 Da
IEP (calculated)
5.785
GRAVY (calculated)
-0.914
Length
1078 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYVWLFLILL ISSSDESILR DGLFSICNVL LWGTLKCSKF SPFCQQTLNI AFLIEQVSQE MASSQVEIAS SSSFGHVLRD RNRRDRCTHR DSNVFQKNLK
0101: DLVHTHIHSC ISSSQPTNTN THSSDANENS RQHRHVDYAD LWVHKPQWDN NENTPTTVDK WDREMVISSR PTKQKGEALE TTTATTVVEV PNSGGVSTLV
0201: RRWRDFETVS KSVNLGNNSN SNPSSAKSNC ENAAFADSNV SQRGDDTCDE SSVDGRFETP AASVNGESAG DWEQVYKTAM NDIQGCKNSD TNKEREKLRV
0301: ADIIKKLASS NGEENHENEN NCTNAAHLAT GECLPRIKTS FDHSEQQLQQ RNFFPVLHSP RIIRGRKALS DLLLQMERDR LRELDTLRER KAVSKFQQRG
0401: RIQALLKVRF LRRVTDTRDD RSTNGTSSES NRVSSSAIMH IREKFNTGSQ NGVSDSRSLS REAAENTQEN RNSTPNQQRV QNKGNNAVKV GSELASHKQR
0501: EGNQKQEIIR ESAAMQPGVA DSRSNSSPKS EIASTSTRED HPEPIDPMTL CINVIDSNTQ IGKVFPSNQL QEENPHGEVN KKISPRMMTT NVKATNSSNS
0601: QKEMSIHIRH SDSSYSPKHN EVDCSPQAVS PSLLHCTSQL HSSDIPHDQA SWENASCQAN HDKSLEFLET SRSPKDSEQS VHREEHDANK LQHAGTSNEW
0701: SSESTKPQSD CEEEATNQNL VDSDCGWVSD YSHTPSGWDE LQSNYQQQLE SNQDWINDVS RPREEWEGLR QERYQEMLDP FLENHDIRQL LNRKSVSIFL
0801: NSGLRDKIDQ LMASRSQELP NARSGQLEKK VGARMTKEWG KEEEVISHIE TRAAGVDDDE EEAYSGYEDD FEDDNNPIRQ QYLKPEELVD QNKASHTLQS
0901: WRNNQDTLPS WSNDQDRGVS DDSYHRPSNS LPQPELSNIY SHHNQQSSST STRHPSIEME LIYELRGHME QLHQEIFEIR RSINSCMNMQ MNLQHSIKDE
1001: VAAAIIQSGP VIGSNSDKKG ANIANCCICY EQQVDSLLYR CGHMCTCFRC AHELLWGTGK CPICETPIID VVRAYIHS
0101: DLVHTHIHSC ISSSQPTNTN THSSDANENS RQHRHVDYAD LWVHKPQWDN NENTPTTVDK WDREMVISSR PTKQKGEALE TTTATTVVEV PNSGGVSTLV
0201: RRWRDFETVS KSVNLGNNSN SNPSSAKSNC ENAAFADSNV SQRGDDTCDE SSVDGRFETP AASVNGESAG DWEQVYKTAM NDIQGCKNSD TNKEREKLRV
0301: ADIIKKLASS NGEENHENEN NCTNAAHLAT GECLPRIKTS FDHSEQQLQQ RNFFPVLHSP RIIRGRKALS DLLLQMERDR LRELDTLRER KAVSKFQQRG
0401: RIQALLKVRF LRRVTDTRDD RSTNGTSSES NRVSSSAIMH IREKFNTGSQ NGVSDSRSLS REAAENTQEN RNSTPNQQRV QNKGNNAVKV GSELASHKQR
0501: EGNQKQEIIR ESAAMQPGVA DSRSNSSPKS EIASTSTRED HPEPIDPMTL CINVIDSNTQ IGKVFPSNQL QEENPHGEVN KKISPRMMTT NVKATNSSNS
0601: QKEMSIHIRH SDSSYSPKHN EVDCSPQAVS PSLLHCTSQL HSSDIPHDQA SWENASCQAN HDKSLEFLET SRSPKDSEQS VHREEHDANK LQHAGTSNEW
0701: SSESTKPQSD CEEEATNQNL VDSDCGWVSD YSHTPSGWDE LQSNYQQQLE SNQDWINDVS RPREEWEGLR QERYQEMLDP FLENHDIRQL LNRKSVSIFL
0801: NSGLRDKIDQ LMASRSQELP NARSGQLEKK VGARMTKEWG KEEEVISHIE TRAAGVDDDE EEAYSGYEDD FEDDNNPIRQ QYLKPEELVD QNKASHTLQS
0901: WRNNQDTLPS WSNDQDRGVS DDSYHRPSNS LPQPELSNIY SHHNQQSSST STRHPSIEME LIYELRGHME QLHQEIFEIR RSINSCMNMQ MNLQHSIKDE
1001: VAAAIIQSGP VIGSNSDKKG ANIANCCICY EQQVDSLLYR CGHMCTCFRC AHELLWGTGK CPICETPIID VVRAYIHS
0001: MEMASSEVEM SSCQTFNCVL SRPHERCTQR DNNTNNNKKK NNNNNNVRNI HVAAFEKNLN VFVRDHLENC SVSVDDVVDD SIKAVPECSS NKSSVSDHRL
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
0101: SKTEESRQDV PSSSSSLGSD SDPNSGQPEN PSRNAASSLV QIWEARTTQQ PPSSNQSLID SRTSSMGSNA LENSESLESV KESQMIQPIE ECNNEEEEEE
0201: IECAPPPLES GEKDREGVRV MDIIRKLSND SETITNNDNG SSGNDNSKEV QTTEARSFPQ VACSPRIRGR QALADLLVQM TRDREKDLAC LRERHCVSKF
0301: TNRGRIQSTL RIRCYERCLA IQGRHRSKST SAGSDSNRSS RGSGVMHLLR EKYKANSENI ETGASTSHAS TRGRIMDKDP HKATEKKVLQ ETIEKSGVKE
0401: IKEVVSAVEN AKKGVLSEIS ENRNGLKKLA GETIQKETVE GKGEKRETKE KVISKESLEG KGEKRESTKE KAIAKESVAE KALVGIAEKV NLWNSDEKMN
0501: RRKVVEKGKT EGNTNTERVE RNDVLEEATR RILSVESAER SSTTTSKETM TRCEVAEKVV KGKKKEDFVS LESNKSKEVE DGNIKPQGVT TQADSCLRKP
0601: AIEEKVLQET TVKSDLKKPT EKESREERRE IEEEESTSMG IAEKVNLWNS KEKKNRRKAM EKGKGKTEGK AITETNELLQ EASRRISNVE TAERSIDTSW
0701: ITVVKVVGDR VIMDKRKSSG ETTRSAEIGG GKKEEDLASV EAKSKDVIED KNMNPQAVIH GSKERDKERN SSQNGEETLS LRNSEAKSTK EIERQEVTQE
0801: EKSVSHGSRE KDKERNSLQY GEKMCFLRNS EAKSTKEIER NKSQEVSQGE ESASHGSRES AKEKNSSQQD DETSTHRNPN DKKGIKEPED EESKKVEREE
0901: TGENVEEASV EFVNDWDGNE MEEEEEEEYG DYFNGDDDWI HDISRPRSYW EDLRKERYLE VLNTESEKKD ICNLIERRTV SNFLTSDLRQ KIDNLMITRV
1001: QSHIGVPLNQ IEEGDEYEEE WEVECSARNE EDNETEEEPE KTNLEAPSDV CSQSSARSST MMSWNFRDQD IDKDNEPTTS LSLPEPLVPT NQSTQDMQTI
1101: SDLKEQMEQL QREMLELRNT VKSCIDMQLH FQKSVTQDLS RSGSSAEQRV DPKKDPLKRK CCVCSEMPVD SLLYRCGHMC TCLKCAHELQ WSSKKCPICM
1201: APIVDVVRAF LDS
Arabidopsis Description
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily /.../n (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). [Source:TAIR;Acc:AT4G20160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.