Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G233500.1 | Wheat | cytosol, plastid | 64.68 | 63.14 |
| TraesCS2B01G251300.1 | Wheat | nucleus, plastid | 62.52 | 62.94 |
| HORVU2Hr1G048520.1 | Barley | plastid | 52.37 | 60.19 |
| EER99396 | Sorghum | plastid | 55.07 | 52.72 |
| Zm00001d021532_P001 | Maize | cytosol, plastid | 54.94 | 52.52 |
| Os07t0499800-01 | Rice | nucleus | 48.58 | 47.74 |
| Zm00001d006417_P002 | Maize | plastid | 34.64 | 43.61 |
| GSMUA_Achr4P33210_001 | Banana | nucleus | 21.52 | 29.28 |
| GSMUA_Achr7P00390_001 | Banana | nucleus | 25.71 | 26.13 |
| VIT_01s0010g00340.t01 | Wine grape | nucleus | 20.16 | 20.44 |
| CDY31650 | Canola | nucleus, plastid | 17.19 | 19.72 |
| Bra005381.1-P | Field mustard | nucleus | 17.05 | 19.44 |
| AT2G34920.2 | Thale cress | nucleus | 17.19 | 19.07 |
| CDX84276 | Canola | endoplasmic reticulum, extracellular | 16.64 | 18.17 |
| CDY52188 | Canola | nucleus | 16.78 | 18.1 |
| Bra021939.1-P | Field mustard | nucleus, plastid | 14.88 | 17.66 |
| Bra023148.1-P | Field mustard | nucleus | 16.78 | 17.59 |
| KRH37161 | Soybean | nucleus | 21.52 | 17.25 |
| Bra039871.1-P | Field mustard | nucleus | 16.24 | 17.09 |
| CDY12454 | Canola | nucleus | 14.88 | 17.05 |
| CDY02344 | Canola | cytosol | 15.83 | 17.01 |
| CDY09519 | Canola | nucleus | 16.37 | 16.88 |
| KRH12155 | Soybean | nucleus | 20.84 | 16.79 |
| AT1G30860.1 | Thale cress | cytosol | 16.1 | 16.3 |
| CDX96975 | Canola | cytosol | 14.21 | 15.28 |
| Solyc10g005220.2.1 | Tomato | nucleus, plastid | 17.86 | 14.01 |
| PGSC0003DMT400035458 | Potato | nucleus | 19.49 | 13.91 |
| Solyc02g082100.2.1 | Tomato | vacuole | 19.76 | 13.54 |
| PGSC0003DMT400029374 | Potato | nucleus, plastid | 18.0 | 13.49 |
| CDY50063 | Canola | cytosol | 17.46 | 11.74 |
| CDY14941 | Canola | nucleus | 9.74 | 11.59 |
| CDX78978 | Canola | cytosol | 16.91 | 11.04 |
| AT5G44690.1 | Thale cress | nucleus | 9.61 | 10.73 |
| Bra013447.1-P | Field mustard | nucleus | 17.73 | 10.6 |
| AT4G20160.2 | Thale cress | cytosol | 17.19 | 10.47 |
| TraesCS6A01G405400.1 | Wheat | nucleus | 9.34 | 9.01 |
| TraesCS5A01G529500.1 | Wheat | plastid | 8.12 | 8.36 |
| TraesCS4A01G311200.1 | Wheat | nucleus | 7.71 | 7.97 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G229600.2 | EnsemblPlantsGene:TraesCS2A01G229600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF11 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SUPFAM:SSF57850 | TIGR:cd16647 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:261172224..261184343
Molecular Weight (calculated)
82144.5 Da
IEP (calculated)
6.537
GRAVY (calculated)
-0.760
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSLAAMPH DSAPWRDPST STSTSRHRRF FNVNVLIPPP RHSFSEAAAT APAEPTPRRK RIILERWAAA AAAATASEPP PPADARRRDR EAELSALASA
101: TRPVAARAAV FREPSPAPSD ASSTTTAGPD LPPSGPRASS LIQRWREIEA VGPVTPRASG DVTSESDGSP RGRVGCIVKK LSGAASLPEE DLEAANNELA
201: LSQSAPPSPT QLRNAVESLA VHIKGTRPPK LVVRTVRGRR AVEELVARMA HRRRRELAAL AERHAVSRFG HKGRIQSMLR LKLLRHGDAI NDEVWNLLRP
301: VRPHPPKCRP EALRDDSSKT DSQDANECSP QNNRADEQHS DDRNPSAEKS TGLAIESLVN SHGSGNRQYD EKIDTKGNQY DEKIDTKGRQ ESSKASSFAR
401: YGDHRVVYDN QYMDDISPST ISTSCELQET PSSRGETLRE EDNQSLNGSW DERALWMSSL GWPAPVDSMS PDSWHQGAIG DMENHNQIEF NDRPWIDSPN
501: SWRSLHIATQ ADSRDLSGNA DICNLLESKK VSNSLESDFS NKMNHLLRAI LQKQRQEHMI DEFGGYYPEH LYWQQNDEPR NEDQVASAPC SLAPVSHVTA
601: HHQDNWQHSS LEQQQHENQN LLEMEVRVRS EMAQIHHEIY ELRKLAETCI ASQVKMQHSI KEEVCSALRE AGLMPSQPDI TAKKGTCCIC HEMQVDSLLY
701: RCGHMCTCFN CADQLKSSSE SCPICQSPID DVVRAHLNF
101: TRPVAARAAV FREPSPAPSD ASSTTTAGPD LPPSGPRASS LIQRWREIEA VGPVTPRASG DVTSESDGSP RGRVGCIVKK LSGAASLPEE DLEAANNELA
201: LSQSAPPSPT QLRNAVESLA VHIKGTRPPK LVVRTVRGRR AVEELVARMA HRRRRELAAL AERHAVSRFG HKGRIQSMLR LKLLRHGDAI NDEVWNLLRP
301: VRPHPPKCRP EALRDDSSKT DSQDANECSP QNNRADEQHS DDRNPSAEKS TGLAIESLVN SHGSGNRQYD EKIDTKGNQY DEKIDTKGRQ ESSKASSFAR
401: YGDHRVVYDN QYMDDISPST ISTSCELQET PSSRGETLRE EDNQSLNGSW DERALWMSSL GWPAPVDSMS PDSWHQGAIG DMENHNQIEF NDRPWIDSPN
501: SWRSLHIATQ ADSRDLSGNA DICNLLESKK VSNSLESDFS NKMNHLLRAI LQKQRQEHMI DEFGGYYPEH LYWQQNDEPR NEDQVASAPC SLAPVSHVTA
601: HHQDNWQHSS LEQQQHENQN LLEMEVRVRS EMAQIHHEIY ELRKLAETCI ASQVKMQHSI KEEVCSALRE AGLMPSQPDI TAKKGTCCIC HEMQVDSLLY
701: RCGHMCTCFN CADQLKSSSE SCPICQSPID DVVRAHLNF
001: MASLRPSFGS VLRDRNQRHN DDVVFKKNLK AQVKTAPPAI SDESSENRVD SLIGNKRKKN NKSRPGSPEK PRTRKGNNFS DNLGGASSLV QIWEARLNRS
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
101: NGGNSAIHSQ SIEISSEASV QEIHLLAPSI DGESESENES KSPDQTVEIE SGTLNSVSDI IRRLSNEQKL TASNNGGAVD MPIVKTPTLE KSSFQVVTCS
201: PRIRGRQAYS DLLVHLERER HRELESLLGR NAVSRFPQRG RLQSMLRLRS LKRGLAIQDR HRGTTKSDLN RFQPSSTILH LREKLREKAA NAAAEAGLKK
301: GQQSTVETES MQSKETSGIL HSPSTERLSP QKRNIEEAIL RKNETETKMS YLQLKKAIVA EVLERESDNT SPLTSVTPQE PRILRNEEAG KLESGTEGTQ
401: ETPFLETQEM SFQSGWEEQE EYEDEQSYYG DMSYDWFTEI SRPRTYWEDL RKSRYLEVMN TKSDKDDICR LLERRTVSGF LQSGLREKID KLIMSRVQIH
501: PAHRIEEATK EEEKYDIGEE KDEDRDDLSQ SSSQIFAPSP AGSWSSLDTG VTSTPTHNLH STEMEIISEM RSHILQLQLE MSELRDSVKT CLDVNASLQK
601: SVHLENPFKR KCCVCNETQV ETLLYRCGHM CTCLRCANEL QYNGGKCPIC HAKILDVVRV FVDSRT
Arabidopsis Description
EDA18RING/U-box superfamily protein [Source:TAIR;Acc:AT2G34920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.