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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 6
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi
Any Predictor:plastid, secretory
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:endoplasmic reticulum
 golgi: 23128297
golgi: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms, gfp PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G020500.2
TraesCS1A01G183100.2
TraesCS1A01G274400.1
TraesCS1A01G358600.1
TraesCS1A01G441200.1
TraesCS1B01G024500.1
TraesCS1B01G197600.1
TraesCS1B01G283900.1
TraesCS1B01G375100.1
TraesCS1B01G475700.1
TraesCS1D01G020000.1
TraesCS1D01G186600.1
TraesCS1D01G274400.1
TraesCS1D01G363500.1
TraesCS1D01G449700.1
TraesCS3A01G047800.1
TraesCS3A01G209200.1
TraesCS3A01G249000.1
TraesCS3B01G034400.1
TraesCS3B01G240000.1
TraesCS3B01G277900.1
TraesCS3D01G031900.1
TraesCS3D01G212100.1
TraesCS3D01G249000.1
TraesCS4A01G356100.2
TraesCS5A01G124300.2
TraesCS5A01G416100.1
TraesCS5B01G124100.1
TraesCS5B01G516100.1
TraesCS5D01G132200.1
TraesCS5D01G423800.1
TraesCS5D01G516200.1
TraesCS7A01G047900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G49240.1 TraesCS1A01G358600.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1A01G441200.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1B01G375100.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1B01G475700.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1D01G363500.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS1D01G449700.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3A01G209200.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3A01G249000.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3B01G240000.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3B01G277900.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3D01G212100.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS3D01G249000.1 AT1G72770.1 19033529
AT1G49240.1 TraesCS7A01G047900.1 AT1G72770.1 19033529
AT5G09810.1 TraesCS1A01G183100.2 AT2G31200.1 21798944
AT5G09810.1 TraesCS1B01G197600.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS1D01G186600.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS5A01G416100.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS5D01G423800.1 AT2G31200.1 21798944
AT5G09810.1 TraesCS3A01G047800.1 AT3G18060.1 21798944
AT5G09810.1 TraesCS3B01G034400.1 AT3G18060.1 21798944
AT5G09810.1 TraesCS3D01G031900.1 AT3G18060.1 21798944
AT5G09810.1 TraesCS1A01G020500.2 AT5G09810.1 21798944
AT5G09810.1 TraesCS1A01G274400.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1B01G024500.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1B01G283900.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1D01G020000.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS1D01G274400.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS4A01G356100.2 AT5G09810.1 21798944
AT5G09810.1 TraesCS5A01G124300.2 AT5G09810.1 21798944
AT5G09810.1 TraesCS5B01G124100.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS5B01G516100.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS5D01G132200.1 AT5G09810.1 21798944
AT5G09810.1 TraesCS5D01G516200.1 AT5G09810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G124100.1 Wheat cytosol 92.18 100.0
Os11t0163100-01 Rice nucleus, plasma membrane, plastid 91.44 99.2
Zm00001d053177_P004 Maize cytosol 90.95 98.67
KXG23031 Sorghum cytosol 90.71 98.41
VIT_12s0178g00200.t01 Wine grape cytosol 90.71 98.41
AT5G09810.1 Thale cress cytosol 90.22 97.88
KRH43389 Soybean cytosol 90.22 97.88
KRH59535 Soybean cytosol 90.22 97.88
CDY21607 Canola cytosol 90.22 97.88
CDX69885 Canola cytosol 90.22 97.88
CDY31972 Canola cytosol 84.35 97.73
CDY30296 Canola cytosol 84.35 97.73
CDX85794 Canola cytosol 84.35 97.73
CDY40061 Canola cytosol 84.35 97.73
TraesCS4A01G356100.2 Wheat cytosol 90.46 97.63
KRH64098 Soybean cytosol 89.98 97.61
Bra028615.1-P Field mustard cytosol 89.98 97.61
PGSC0003DMT400047481 Potato cytosol 89.98 97.61
Solyc03g078400.2.1 Tomato nucleus, plastid 89.98 97.61
KRH53856 Soybean endoplasmic reticulum, mitochondrion 79.22 97.59
Bra009081.1-P Field mustard cytosol 84.11 97.45
PGSC0003DMT400010174 Potato cytosol 89.73 97.35
CDY56544 Canola cytosol 89.73 97.35
Solyc11g005330.1.1 Tomato nucleus 89.73 97.35
CDX81140 Canola cytosol 89.73 97.35
Bra006033.1-P Field mustard cytosol 89.49 97.08
Solyc01g104770.2.1 Tomato nucleus 89.0 96.55
TraesCS5A01G000400.1 Wheat golgi 88.51 96.02
TraesCS5D01G132200.1 Wheat golgi 87.04 95.96
PGSC0003DMT400076499 Potato cytosol 45.23 95.85
KRH43946 Soybean endoplasmic reticulum, mitochondrion, nucleus 87.53 94.96
KRH10484 Soybean endoplasmic reticulum, mitochondrion, nucleus 87.53 94.96
TraesCS1A01G274400.1 Wheat golgi 85.82 93.35
Solyc04g071260.2.1 Tomato plastid 85.09 92.31
TraesCS3A01G377300.1 Wheat cytosol 84.84 92.29
CDX82326 Canola cytosol 84.6 91.78
AT1G49240.1 Thale cress cytosol 84.6 91.78
CDX99315 Canola cytosol 72.37 91.64
Bra022356.1-P Field mustard cytosol 72.37 91.64
AT3G18780.3 Thale cress cytosol 84.35 91.51
CDX92272 Canola cytosol 84.35 91.51
CDX95498 Canola cytosol 84.35 91.51
CDY18545 Canola cytosol 84.35 91.51
CDY61982 Canola cytosol 84.35 91.51
CDX92271 Canola cytosol 70.42 90.85
TraesCS1A01G020500.2 Wheat cytosol 89.98 90.42
PGSC0003DMT400076501 Potato cytosol 43.03 88.0
TraesCS4A01G264400.3 Wheat cytosol, plastid 83.86 87.5
Bra037560.1-P Field mustard cytoskeleton, cytosol 72.13 83.57
VIT_04s0044g00580.t01 Wine grape extracellular 91.69 81.52
PGSC0003DMT400087294 Potato mitochondrion 52.32 78.1
TraesCS1A01G179000.1 Wheat cytosol 85.82 78.0
HORVU5Hr1G039850.3 Barley mitochondrion 88.26 77.63
PGSC0003DMT400022210 Potato cytosol 63.57 70.65
PGSC0003DMT400022205 Potato cytosol 62.1 69.4
PGSC0003DMT400074882 Potato cytosol 62.35 68.92
PGSC0003DMT400074887 Potato cytosol 59.66 65.95
PGSC0003DMT400088088 Potato cytosol 30.32 63.92
Zm00001d004855_P002 Maize cytoskeleton, cytosol, nucleus 89.73 62.2
TraesCS3A01G369400.1 Wheat cytosol 41.32 42.25
TraesCS5A01G356000.1 Wheat cytosol, nucleus 39.12 36.12
TraesCS6A01G162300.2 Wheat cytosol 38.14 35.21
TraesCS5A01G420600.1 Wheat cytosol, nucleus 31.05 35.08
TraesCS6A01G211000.1 Wheat cytosol 35.21 33.72
TraesCS7A01G311700.1 Wheat cytosol 34.72 32.57
TraesCS2A01G585700.1 Wheat cytosol 30.32 28.84
Protein Annotations
EnsemblPlants:TraesCS5A01G124300.2EnsemblPlantsGene:TraesCS5A01G124300Gene3D:3.30.420.40Gene3D:3.90.640.10InterPro:ActinInterPro:Actin/actin-like_CS
InterPro:Actin_CSPANTHER:PTHR11937PANTHER:PTHR11937:SF252PFAM:PF00022PRINTS:PR00190ScanProsite:PS00406
ScanProsite:PS00432ScanProsite:PS01132SEG:segSignalP:SignalP-noTMSMART:SM00268SUPFAM:SSF53067
TIGR:cd00012MapMan:20.2.1::::
Description
No Description!
Coordinates
chr5A:-:272131763..272133277
Molecular Weight (calculated)
45142.4 Da
IEP (calculated)
5.172
GRAVY (calculated)
-0.073
Length
409 amino acids
Sequence
(BLAST)
001: MVNFLLFVSL FSLVSGNNSL LVKLCATESL NQMADGEDIQ PLVCDNGTGM VKAGFAGDDA PRAVFPSIVG RPRHTGVMVG MGQKDAYVGD EAQSKRGILT
101: LKYPIEHGIV SNWDDMEKIW HHTFYNELRV APEEHPVLLT EAPLNPKANR EKMTQIMFET FNVPAMYVAI QAVLSLYASG RTTGIVLDSG DGVSHTVPIY
201: EGYALPHAIL RLDLAGRDLT DCLMKILTER GYSFTTTAER EIVRDIKEKL AYVALDYEQE LENAKSSSSV EKSYELPDGQ VITIGAERFR CPEVLFQPSF
301: IGMEAAGIHE TTYNSIMKCD VDIRKDLYGN IVLSGGSTMF PGIADRMSKE ITALAPSSMK IKVVAPPERK YSVWIGGSIL ASLSTFQQMW ISKGEYDESG
401: PAIVHRKCF
Best Arabidopsis Sequence Match ( AT5G09810.1 )
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: MFTTTAEREI VRDIKEKLAY VALDYEQELE TAKSSSSVEK NYELPDGQVI TIGAERFRCP EVLFQPSLIG MEAPGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KSEYDESGPS IVHRKCF
Arabidopsis Description
ACT7AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.