Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076499 | Potato | cytosol | 49.87 | 95.85 |
| TraesCS5B01G124100.1 | Wheat | cytosol | 95.96 | 94.43 |
| Os11t0163100-01 | Rice | nucleus, plasma membrane, plastid | 95.15 | 93.63 |
| Zm00001d053177_P004 | Maize | cytosol | 94.88 | 93.37 |
| TraesCS1D01G177400.1 | Wheat | cytosol | 94.34 | 92.84 |
| VIT_12s0178g00200.t01 | Wine grape | cytosol | 94.34 | 92.84 |
| AT5G09810.1 | Thale cress | cytosol | 94.34 | 92.84 |
| KXG23031 | Sorghum | cytosol | 94.34 | 92.84 |
| TraesCS5D01G516200.1 | Wheat | cytosol | 94.34 | 92.84 |
| CDY21607 | Canola | cytosol | 94.07 | 92.57 |
| CDX69885 | Canola | cytosol | 94.07 | 92.57 |
| KRH43389 | Soybean | cytosol | 94.07 | 92.57 |
| KRH59535 | Soybean | cytosol | 94.07 | 92.57 |
| PGSC0003DMT400047481 | Potato | cytosol | 93.8 | 92.31 |
| KRH64098 | Soybean | cytosol | 93.8 | 92.31 |
| TraesCS1D01G020000.1 | Wheat | cytosol | 93.8 | 92.31 |
| Bra028615.1-P | Field mustard | cytosol | 93.8 | 92.31 |
| Solyc03g078400.2.1 | Tomato | nucleus, plastid | 93.8 | 92.31 |
| CDY31972 | Canola | cytosol | 87.6 | 92.07 |
| CDY40061 | Canola | cytosol | 87.6 | 92.07 |
| CDY30296 | Canola | cytosol | 87.6 | 92.07 |
| CDX85794 | Canola | cytosol | 87.6 | 92.07 |
| CDY56544 | Canola | cytosol | 93.53 | 92.04 |
| Solyc11g005330.1.1 | Tomato | nucleus | 93.53 | 92.04 |
| CDX81140 | Canola | cytosol | 93.53 | 92.04 |
| PGSC0003DMT400010174 | Potato | cytosol | 93.53 | 92.04 |
| Bra009081.1-P | Field mustard | cytosol | 87.33 | 91.78 |
| Bra006033.1-P | Field mustard | cytosol | 93.26 | 91.78 |
| KRH53856 | Soybean | endoplasmic reticulum, mitochondrion | 81.94 | 91.57 |
| Solyc01g104770.2.1 | Tomato | nucleus | 92.99 | 91.51 |
| TraesCS5D01G000400.1 | Wheat | cytosol | 92.72 | 91.25 |
| CDX92271 | Canola | cytosol | 77.63 | 90.85 |
| KRH43946 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 90.84 | 89.39 |
| KRH10484 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 90.84 | 89.39 |
| TraesCS1D01G274400.1 | Wheat | cytosol | 89.76 | 88.56 |
| TraesCS4D01G050800.2 | Wheat | cytosol | 92.72 | 88.21 |
| CDX82326 | Canola | cytosol | 89.22 | 87.8 |
| AT1G49240.1 | Thale cress | cytosol | 89.22 | 87.8 |
| AT3G18780.3 | Thale cress | cytosol | 88.95 | 87.53 |
| CDX92272 | Canola | cytosol | 88.95 | 87.53 |
| CDX95498 | Canola | cytosol | 88.95 | 87.53 |
| CDY18545 | Canola | cytosol | 88.95 | 87.53 |
| CDY61982 | Canola | cytosol | 88.95 | 87.53 |
| Solyc04g071260.2.1 | Tomato | plastid | 88.68 | 87.27 |
| TraesCS5A01G124300.2 | Wheat | golgi | 95.96 | 87.04 |
| Bra022356.1-P | Field mustard | cytosol | 75.74 | 87.0 |
| CDX99315 | Canola | cytosol | 75.74 | 87.0 |
| Bra037560.1-P | Field mustard | cytoskeleton, cytosol | 79.78 | 83.85 |
| PGSC0003DMT400076501 | Potato | cytosol | 42.32 | 78.5 |
| TraesCS3D01G370400.3 | Wheat | plastid | 85.98 | 78.0 |
| VIT_04s0044g00580.t01 | Wine grape | extracellular | 94.07 | 75.87 |
| PGSC0003DMT400087294 | Potato | mitochondrion | 54.18 | 73.36 |
| HORVU5Hr1G039850.3 | Barley | mitochondrion | 91.64 | 73.12 |
| PGSC0003DMT400022210 | Potato | cytosol | 70.35 | 70.92 |
| PGSC0003DMT400022205 | Potato | cytosol | 68.73 | 69.67 |
| PGSC0003DMT400074882 | Potato | cytosol | 69.0 | 69.19 |
| PGSC0003DMT400074887 | Potato | cytosol | 66.04 | 66.22 |
| PGSC0003DMT400088088 | Potato | cytosol | 33.15 | 63.4 |
| Zm00001d004855_P002 | Maize | cytoskeleton, cytosol, nucleus | 94.07 | 59.15 |
| TraesCS3D01G362400.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 42.05 | 40.1 |
| TraesCS5D01G364800.1 | Wheat | cytosol | 40.16 | 33.63 |
| TraesCS6D01G149800.1 | Wheat | cytosol | 39.35 | 32.96 |
| TraesCS6D01G194100.1 | Wheat | cytosol | 36.66 | 31.85 |
| TraesCS5D01G429200.1 | Wheat | cytosol | 30.46 | 31.22 |
| TraesCS7D01G308200.1 | Wheat | cytosol | 36.39 | 29.93 |
| TraesCS2D01G600800.1 | Wheat | cytosol | 31.0 | 26.74 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G132200.1 | EnsemblPlantsGene:TraesCS5D01G132200 | Gene3D:3.30.420.40 | Gene3D:3.90.640.10 | InterPro:Actin | InterPro:Actin/actin-like_CS |
| InterPro:Actin_CS | PANTHER:PTHR11937 | PANTHER:PTHR11937:SF252 | PFAM:PF00022 | PRINTS:PR00190 | ScanProsite:PS00406 |
| ScanProsite:PS01132 | SMART:SM00268 | SUPFAM:SSF53067 | TIGR:cd00012 | MapMan:20.2.1 | : |
Description
No Description!
Coordinates
chr5D:-:210374584..210375926
Molecular Weight (calculated)
40877.2 Da
IEP (calculated)
5.136
GRAVY (calculated)
-0.085
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDC LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY VALDYEQELE NAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVTVN ILPICCTNHV F
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDC LMKILTERGY
201: SFTTTAEREI VRDIKEKLAY VALDYEQELE NAKSSSSVEK SYELPDGQVI TIGAERFRCP EVLFQPSFIG MEAAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGSTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQVTVN ILPICCTNHV F
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
Arabidopsis Description
ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.