Factsheet for TraesCS7D01G308200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G196600.1
TraesCS2B01G224200.1
TraesCS2D01G204600.1
TraesCS3A01G134300.3
TraesCS3A01G369400.1
TraesCS3B01G168100.1
TraesCS3B01G401300.2
TraesCS3D01G150600.1
TraesCS3D01G362400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	TraesCS3A01G134300.3	AT1G29170.1	17267444
AT1G13180.1	TraesCS3B01G168100.1	AT1G29170.1	17267444
AT1G13180.1	TraesCS3D01G150600.1	AT1G29170.1	17267444
AT1G13180.1	TraesCS2A01G196600.1	AT2G22640.1	17267444
AT1G13180.1	TraesCS2B01G224200.1	AT2G22640.1	17267444
AT1G13180.1	TraesCS2D01G204600.1	AT2G22640.1	17267444
AT1G13180.1	TraesCS3A01G369400.1	AT3G27000.1	17267444
AT1G13180.1	TraesCS3B01G401300.2	AT3G27000.1	17267444
AT1G13180.1	TraesCS3D01G362400.1	AT3G27000.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G311700.1	Wheat	cytosol	95.79	99.08
TraesCS7B01G211500.1	Wheat	cytosol	95.57	98.85
HORVU7Hr1G074460.5	Barley	cytosol	92.46	95.64
KXG24330	Sorghum	cytosol	84.48	87.59
Os08t0128300-01	Rice	cytosol	34.81	87.22
Zm00001d049629_P002	Maize	nucleus	67.85	83.15
VIT_01s0137g00280.t01	Wine grape	cytosol	66.74	70.33
PGSC0003DMT400027956	Potato	cytosol	66.96	70.07
Solyc05g013940.2.1	Tomato	cytosol	66.52	69.93
TraesCS6D01G194100.1	Wheat	cytosol	66.08	69.79
KRH59228	Soybean	nucleus	66.08	69.63
Solyc04g024530.2.1	Tomato	cytosol	66.08	69.46
AT1G13180.1	Thale cress	cytosol	65.41	69.09
GSMUA_Achr8P01270_001	Banana	cytosol	64.97	68.62
CDX98005	Canola	cytosol	64.52	68.15
Bra019815.1-P	Field mustard	cytosol	64.52	68.15
Bra016738.1-P	Field mustard	cytosol	64.3	67.92
CDY19392	Canola	cytosol	64.08	67.68
CDY21087	Canola	cytosol	64.08	67.68
CDY34585	Canola	cytosol	63.86	67.45
KRH59222	Soybean	cytosol	27.94	65.62
TraesCS1D01G020000.1	Wheat	cytosol	32.15	38.46
TraesCS5D01G000400.1	Wheat	cytosol	31.71	37.93
TraesCS5D01G516200.1	Wheat	cytosol	31.71	37.93
TraesCS1D01G177400.1	Wheat	cytosol	31.26	37.4
TraesCS1D01G274400.1	Wheat	cytosol	30.38	36.44
TraesCS5D01G132200.1	Wheat	golgi	29.93	36.39
TraesCS4D01G050800.2	Wheat	cytosol	30.16	34.87
TraesCS3D01G370400.3	Wheat	plastid	29.49	32.52
TraesCS3D01G362400.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.61	30.85
TraesCS5D01G429200.1	Wheat	cytosol	21.29	26.52
TraesCS5D01G364800.1	Wheat	cytosol	25.28	25.73
TraesCS6D01G149800.1	Wheat	cytosol	24.61	25.06
TraesCS2D01G600800.1	Wheat	cytosol	21.73	22.79

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	InterPro:Actin	InterPro:Arp3	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0034314	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	SMART:SM00268	SUPFAM:SSF53067
EnsemblPlantsGene:TraesCS7D01G308200	EnsemblPlants:TraesCS7D01G308200.1	TIGR:cd00012	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:+:390680179..390688884

Molecular Weight (calculated)

50786.8 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.283

Length

451 amino acids

Sequence
(BLAST)

001: MDPSERPAVV FDNGTGYNPE SLRPILRLYR WYSKLGFAGN SEPSFTIPTV VAVNESFLDQ SEQCSSANWL AQYNAGVMAD LDFFIGDEAL SHFKSSGLYS
101: LRSPIRHGQV NDWDTMERFW QQSIFNYLRC NPEEHYFLLT DSPVSTPESR ECMGEIMFET FNVPGLYISV QSVLSLSAGF AYLKSLSEED SEDSVSDMTG
201: VVVDIGDGAP HIVPVVNGYV IGSSIKSFPL SGSDVTQFVM QLLQERGELL PPDDALDIAR RVKETYCYTP SDIVKEFKKH DSKPSKYIKQ WSAIKPKTGV
301: PYTIDVGYER FLGPEIFFHP EMYSADFSTP LPELIDSCVQ SAPIDTRRAL YKNIVLSGGT TMFKDFHKRL QNNIKKIVDE RVAETNAHHR VEVKPVEVNV
401: VTHPIQSYAV WFGGSVAASS HEFFECCHTK EDYEEHGASI CRTSTVFKGM Y

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.