CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94584
KRH06905
KRH39504
KRH42863
KRH53518
KRH64414
KRH65551
KRH65850
KRH74448

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	KRH42863	AT1G29170.1	17267444
AT1G13180.1	KRH39504	AT2G22640.1	17267444
AT1G13180.1	KRH74448	AT2G22640.1	17267444
AT1G13180.1	KRG94584	AT3G27000.1	17267444
AT1G13180.1	KRH06905	AT3G27000.1	17267444
AT1G13180.1	KRH53518	AT3G49290.1	17267444
AT1G13180.1	KRH64414	AT3G49290.1	17267444
AT1G13180.1	KRH65551	AT3G49290.1	17267444
AT1G13180.1	KRH65850	AT3G49290.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P05970_001	Banana	cytosol	73.96	80.23
Os08t0128300-01	Rice	cytosol	62.5	66.67
Zm00001d008652_P001	Maize	endoplasmic reticulum, plastid	62.5	51.95
KRH59228	Soybean	nucleus	87.5	39.25
VIT_01s0137g00280.t01	Wine grape	cytosol	81.25	36.45
AT1G13180.1	Thale cress	cytosol	80.21	36.07
CDX98005	Canola	cytosol	80.21	36.07
Bra019815.1-P	Field mustard	cytosol	80.21	36.07
CDY34585	Canola	cytosol	79.69	35.83
CDY19392	Canola	cytosol	79.69	35.83
Bra016738.1-P	Field mustard	cytosol	79.17	35.6
CDY21087	Canola	cytosol	78.65	35.36
GSMUA_Achr6P21120_001	Banana	cytosol	78.65	35.36
Solyc04g024530.2.1	Tomato	cytosol	77.6	34.73
TraesCS6D01G194100.1	Wheat	cytosol	77.08	34.66
TraesCS6A01G211000.1	Wheat	cytosol	77.08	34.66
TraesCS6B01G240500.1	Wheat	cytosol	77.08	34.66
GSMUA_Achr9P07630_001	Banana	cytosol	76.56	34.35
PGSC0003DMT400027956	Potato	cytosol	77.08	34.34
Os02t0596900-01	Rice	cytosol	76.04	34.11
Solyc05g013940.2.1	Tomato	cytosol	75.52	33.8
Zm00001d017106_P001	Maize	cytosol	75.52	33.49
KXG30555	Sorghum	cytosol	75.0	33.26
Zm00001d050981_P001	Maize	cytosol	76.04	31.81
HORVU6Hr1G053910.4	Barley	cytosol	72.4	31.45
GSMUA_Achr8P01270_001	Banana	cytosol	68.75	30.91
KXG24330	Sorghum	cytosol	65.62	28.97
TraesCS7A01G311700.1	Wheat	cytosol	65.62	28.9
TraesCS7B01G211500.1	Wheat	cytosol	65.1	28.67
TraesCS7D01G308200.1	Wheat	cytosol	65.62	27.94
HORVU7Hr1G074460.5	Barley	cytosol	60.42	26.61
Zm00001d049629_P002	Maize	nucleus	36.46	19.02
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.42	18.04
KRH43389	Soybean	cytosol	35.42	18.04
KRH59535	Soybean	cytosol	35.42	18.04
KRH01660	Soybean	mitochondrion, nucleus	35.42	18.04
KRH64098	Soybean	cytosol	35.42	18.04
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	35.42	18.04
KRH70465	Soybean	mitochondrion, nucleus	35.42	18.04
KRG93168	Soybean	mitochondrion, nucleus	34.9	17.77
KRG95386	Soybean	cytosol	34.9	17.77
KRH10268	Soybean	mitochondrion, nucleus	34.9	17.77
KRH23061	Soybean	endoplasmic reticulum, mitochondrion, nucleus	34.9	17.77
KRH29804	Soybean	endoplasmic reticulum, mitochondrion, nucleus	34.9	17.77
KRH71847	Soybean	endoplasmic reticulum, nucleus	34.9	17.77
KRH67068	Soybean	endoplasmic reticulum, mitochondrion, nucleus	34.9	17.77
KRH38098	Soybean	cytosol	34.9	17.77
KRH56507	Soybean	endoplasmic reticulum, mitochondrion	34.9	17.77
KRH24799	Soybean	cytosol	34.9	16.34
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	27.6	15.96
KRG94584	Soybean	cytosol	31.77	15.68
KRH06905	Soybean	cytosol	31.25	15.42
KRH39934	Soybean	cytosol	21.35	12.42
KRH13968	Soybean	cytosol, nucleus	22.4	11.91
KRH32953	Soybean	cytosol	22.4	11.91
KRH48882	Soybean	nucleus	27.08	11.66
KRH23861	Soybean	cytosol, nucleus	21.88	11.63
KRH41617	Soybean	nucleus	26.04	11.6
KRH66446	Soybean	nucleus	26.56	11.46
KRH61849	Soybean	cytosol, nucleus	22.4	9.86
GSMUA_Achr2P05960_001	Banana	cytosol	11.98	7.52

Protein Annotations

EntrezGene:100778870	Gene3D:3.30.420.40	MapMan:35.1	EMBL:ACUP02003307	InterPro:Actin	InterPro:Arp3
EMBL:BT096648	EMBL:BT096665	UniProt:C6TG99	EnsemblPlantsGene:GLYMA_05G172200	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005885	GO:GO:0007015	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034314
EnsemblPlants:KRH59222	ProteinID:KRH59222	ProteinID:KRH59222.1	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258
SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI0001B16A22	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:36233601..36235189

Molecular Weight (calculated)

21436.2 Da

IEP (calculated)

4.387

GRAVY (calculated)

-0.240

Length

192 amino acids

Sequence
(BLAST)

001: MDPSTFRPAV VIDNGSGYTK MGFAGNVEPC FIAPTVVAVN ESFLNQSRGS SKGNWVAQHN AGIMADLDFF IGDEALTKSR SSSSYNLSYP IQHGQVENWD
101: AMERFWQQCI FNYLSCDPED HYFLLTESPL TPPESREYTG EIMFETFNVP GLYIGVNSVL ALAAGYTTSK VGNRYTRKRL GIMLNIELEL DD

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.