Factsheet for Os02t0596900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0208600-01
Os02t0829900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13180.1	Os01t0208600-01	AT1G29170.1	17267444
AT1G13180.1	Os02t0829900-01	AT2G22640.1	17267444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G211000.1	Wheat	cytosol	92.06	92.27
TraesCS6D01G194100.1	Wheat	cytosol	92.06	92.27
TraesCS6B01G240500.1	Wheat	cytosol	91.82	92.04
Zm00001d017106_P001	Maize	cytosol	91.59	90.53
KXG30555	Sorghum	cytosol	91.36	90.3
HORVU6Hr1G053910.4	Barley	cytosol	89.72	86.88
GSMUA_Achr6P21120_001	Banana	cytosol	86.22	86.42
VIT_01s0137g00280.t01	Wine grape	cytosol	85.98	85.98
PGSC0003DMT400027956	Potato	cytosol	85.98	85.38
Solyc05g013940.2.1	Tomato	cytosol	85.51	85.31
Zm00001d050981_P001	Maize	cytosol	90.42	84.31
KRH59228	Soybean	nucleus	83.41	83.41
Solyc04g024530.2.1	Tomato	cytosol	83.18	82.98
AT1G13180.1	Thale cress	cytosol	81.31	81.5
CDY19392	Canola	cytosol	80.37	80.56
CDX98005	Canola	cytosol	80.37	80.56
Bra019815.1-P	Field mustard	cytosol	80.37	80.56
Bra016738.1-P	Field mustard	cytosol	80.14	80.33
CDY34585	Canola	cytosol	79.91	80.09
CDY21087	Canola	cytosol	79.91	80.09
KRH59222	Soybean	cytosol	34.11	76.04
Os08t0128300-01	Rice	cytosol	26.64	63.33
Os10t0510000-01	Rice	plastid	33.88	38.46
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	33.88	38.46
Os03t0836000-01	Rice	plasma membrane, plastid	33.88	38.46
Os03t0718100-01	Rice	plasma membrane	33.88	38.46
Os05t0106600-01	Rice	nucleus	33.64	38.2
Os01t0964133-01	Rice	plasma membrane	33.41	37.93
Os05t0438800-01	Rice	plasma membrane, plastid	33.18	37.77
Os12t0163700-01	Rice	plastid	31.78	37.47
Os01t0866100-01	Rice	plasma membrane	14.25	30.05
Os03t0783000-01	Rice	cytosol, nucleus	22.66	26.94
Os08t0137200-01	Rice	nucleus	26.87	25.96
Os01t0269900-01	Rice	cytosol	24.07	24.01

Protein Annotations

MapMan:20.2.2.1.2	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:4329867	EMBL:AK101163	InterPro:Actin
InterPro:Arp3	ProteinID:BAD21625.1	ProteinID:BAF09237.1	ProteinID:BAS79560.1	ProteinID:EEE57301.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005885	GO:GO:0007015
GO:GO:0007275	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0034314	EnsemblPlantsGene:Os02g0596900
EnsemblPlants:Os02t0596900-01	PFAM:PF00022	PANTHER:PTHR11937	PANTHER:PTHR11937:SF258	UniProt:Q6K908	SMART:SM00268
SUPFAM:SSF53067	UniParc:UPI0000377C57	RefSeq:XP_015623040.1	SEG:seg	:	:

Description

ARP3Actin/actin-like family protein. (Os02t0596900-01)

Coordinates

chr2:+:23177585..23182048

Molecular Weight (calculated)

48063.0 Da

IEP (calculated)

6.237

GRAVY (calculated)

-0.292

Length

428 amino acids

Sequence
(BLAST)

001: MDAASRPAVV IDNGTGYTKM GFAGNVEPCF ITPTVVAVND TFAGQTRANT TKGNWMAQHS AGVMADLDFF IGEDALARSR SSNTYNLSYP IHNGQVENWD
101: TMERFWQQCI FNYLRCDPED HYFLLTESPL TPPETREYTG EIMFETFNVP GLYIACQPVL ALAAGYTTTK CEMTGVVVDV GDGATHIVPV ADGYVIGSSI
201: RSIPITGKDV TQFIQQLLKE RGEHIPPEES FDVARRVKEM YCYTCSDIVK EFNKHDREPN KYIKHWSGIK PKTGAKYTCD IGYERFLGPE IFFHPEIYNN
301: DFTTPLHVVI DKCIQSSPID TRRALYKNIV LSGGSTMFKD FHRRLQRDLK KIVDARVLAS NARLGGDAKA QPIEVNVVSH PIQRYAVWFG GSVLASTAEF
401: YEACHTKAEY EEYGASICRT NPVFKGMY

Best Arabidopsis Sequence Match ( AT1G13180.1 )
(BLAST)

001: MDPTSRPAIV IDNGTGYTKM GFAGNVEPCF ILPTVVAVNE SFLNQSKSSS KATWQTQHNA GVAADLDFYI GDEALAKSRS SSTHNLHYPI EHGQVEDWDA
101: MERYWQQCIF NYLRCDPEDH YFLLTESPLT PPESREYTGE ILFETFNVPG LYIAVNSVLA LAAGYTTSKC EMTGVVVDVG DGATHVVPVA EGYVIGSCIK
201: SIPIAGKDVT LFIQQLMRER GENIPPEDSF DVARKVKEMY CYTCSDIVKE FNKHDKEPAK YIKQWKGVKP KTGAPYTCDV GYERFLGPEV FFNPEIYSND
301: FTTTLPAVID KCIQSAPIDT RRALYKNIVL SGGSTMFKDF GRRLQRDLKK IVDARVLANN ARTGGEITSQ PVEVNVVSHP VQRFAVWFGG SVLSSTPEFF
401: ASCRTKEEYE EYGASICRTN PVFKGMY

Arabidopsis Description

ARP3Actin-related protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.