Factsheet for Os01t0964133-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
golgi: 25047511
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0125800-01
Os01t0583100-01
Os01t0866100-01
Os01t0964133-01
Os03t0780400-01
Os03t0836000-01
Os05t0106600-01
Os05t0438800-01
Os05t0537400-00
Os05t0592800-02
Os07t0297500-00
Os10t0521100-01
Os11t0163100-01
Os12t0628100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49240.1	Os01t0583100-01	AT1G72770.1	19033529
AT1G49240.1	Os05t0537400-00	AT1G72770.1	19033529
AT1G49240.1	Os05t0592800-02	AT1G72770.1	19033529
AT5G09810.1	Os03t0780400-01	AT2G31200.1	21798944
AT5G09810.1	Os07t0297500-00	AT2G31200.1	21798944
AT5G09810.1	Os10t0521100-01	AT2G31200.1	21798944
AT5G09810.1	Os12t0628100-01	AT2G31200.1	21798944
AT5G09810.1	Os01t0125800-01	AT3G18060.1	21798944
AT5G09810.1	Os01t0866100-01	AT5G09810.1	21798944
AT5G09810.1	Os01t0964133-01	AT5G09810.1	21798944
AT5G09810.1	Os03t0836000-01	AT5G09810.1	21798944
AT5G09810.1	Os05t0106600-01	AT5G09810.1	21798944
AT5G09810.1	Os05t0438800-01	AT5G09810.1	21798944
AT5G09810.1	Os11t0163100-01	AT5G09810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0106600-01	Rice	nucleus	98.94	98.94
Os11t0163100-01	Rice	nucleus, plasma membrane, plastid	97.08	97.08
KRH59535	Soybean	cytosol	96.82	96.82
KRH43389	Soybean	cytosol	96.82	96.82
KRH64098	Soybean	cytosol	96.82	96.82
PGSC0003DMT400047481	Potato	cytosol	96.82	96.82
Solyc03g078400.2.1	Tomato	nucleus, plastid	96.82	96.82
KRH53856	Soybean	endoplasmic reticulum, mitochondrion	85.15	96.69
AT5G09810.1	Thale cress	cytosol	96.55	96.55
VIT_12s0178g00200.t01	Wine grape	cytosol	96.55	96.55
Solyc11g005330.1.1	Tomato	nucleus	96.29	96.29
CDX69885	Canola	cytosol	96.29	96.29
PGSC0003DMT400010174	Potato	cytosol	96.29	96.29
CDY21607	Canola	cytosol	96.29	96.29
CDY30296	Canola	cytosol	89.92	96.03
CDY40061	Canola	cytosol	89.92	96.03
CDY31972	Canola	cytosol	89.92	96.03
CDX85794	Canola	cytosol	89.92	96.03
Os10t0510000-01	Rice	plastid	96.02	96.02
Bra028615.1-P	Field mustard	cytosol	96.02	96.02
Os12t0163700-01	Rice	plastid	92.31	95.87
PGSC0003DMT400076499	Potato	cytosol	49.07	95.85
CDX81140	Canola	cytosol	95.76	95.76
CDY56544	Canola	cytosol	95.76	95.76
Os03t0836000-01	Rice	plasma membrane, plastid	95.76	95.76
Bra009081.1-P	Field mustard	cytosol	89.66	95.75
Bra006033.1-P	Field mustard	cytosol	95.49	95.49
Solyc01g104770.2.1	Tomato	nucleus	95.49	95.49
Os03t0718100-01	Rice	plasma membrane	95.23	95.23
KRH43946	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.16	94.16
KRH10484	Soybean	endoplasmic reticulum, mitochondrion, nucleus	94.16	94.16
Os05t0438800-01	Rice	plasma membrane, plastid	93.37	93.62
Solyc04g071260.2.1	Tomato	plastid	92.04	92.04
CDX99315	Canola	cytosol	78.25	91.33
AT1G49240.1	Thale cress	cytosol	91.25	91.25
Bra022356.1-P	Field mustard	cytosol	77.98	91.02
AT3G18780.3	Thale cress	cytosol	90.98	90.98
CDX82326	Canola	cytosol	90.98	90.98
CDY61982	Canola	cytosol	90.98	90.98
CDX92272	Canola	cytosol	90.98	90.98
CDY18545	Canola	cytosol	90.98	90.98
CDX95498	Canola	cytosol	90.98	90.98
CDX92271	Canola	cytosol	75.86	90.22
PGSC0003DMT400076501	Potato	cytosol	45.89	86.5
Bra037560.1-P	Field mustard	cytoskeleton, cytosol	77.72	83.0
VIT_04s0044g00580.t01	Wine grape	extracellular	96.02	78.7
PGSC0003DMT400087294	Potato	mitochondrion	55.44	76.28
Os01t0866100-01	Rice	plasma membrane	37.93	70.44
PGSC0003DMT400022210	Potato	cytosol	68.17	69.84
PGSC0003DMT400022205	Potato	cytosol	66.84	68.85
PGSC0003DMT400074882	Potato	cytosol	66.84	68.11
PGSC0003DMT400074887	Potato	cytosol	63.93	65.14
PGSC0003DMT400088088	Potato	cytosol	32.89	63.92
Os03t0783000-01	Rice	cytosol, nucleus	34.48	36.11
Os08t0137200-01	Rice	nucleus	41.38	35.21
Os08t0128300-01	Rice	cytosol	16.71	35.0
Os02t0596900-01	Rice	cytosol	37.93	33.41
Os01t0269900-01	Rice	cytosol	32.63	28.67

Protein Annotations

MapMan:20.2.1	Gene3D:3.30.420.40	Gene3D:3.90.640.10	EntrezGene:9269066	EMBL:AK243651	InterPro:Actin
InterPro:Actin/actin-like_CS	InterPro:Actin_CS	ProteinID:BAB63635.1	ProteinID:BAS76363.1	ProteinID:EAZ14938.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:Os01g0964133	EnsemblPlants:Os01t0964133-01	PFAM:PF00022
PRINTS:PR00190	ScanProsite:PS00406	ScanProsite:PS00432	ScanProsite:PS01132	PANTHER:PTHR11937	PANTHER:PTHR11937:SF252
UniProt:Q94DL4	SMART:SM00268	SUPFAM:SSF53067	UniParc:UPI00000A2C6B	RefSeq:XP_015621552.1	:

Description

Similar to Actin. (Os01t0964133-01)

Coordinates

chr1:-:42484125..42487406

Molecular Weight (calculated)

41730.1 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.197

Length

377 amino acids

Sequence
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVSN WDDMEKIWHH TFYNELRVAP
101: EEHPVLLTEA PLNPKANREK MTQIMFETFN VPAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDS LMKILTERGY
201: SFTTSAEREI VRDIKEKLAY VALDYEQELE TAKNSSSIEK SYELPDGQVI TIGSERFRCP EVLFQPSMIG MESAGIHETT YNSIMKCDVD IRKDLYGNVV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIS KDEYDESGPA IVHRKCF

Best Arabidopsis Sequence Match ( AT2G37620.4 )
(BLAST)

001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF

Arabidopsis Description

ACT1Actin-3 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.