Factsheet for Os03t0780400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90794	Sorghum	cytosol	95.86	95.86
Zm00001d013141_P001	Maize	cytosol	95.17	95.17
TraesCS5D01G423800.1	Wheat	golgi	94.48	94.48
TraesCS5A01G416100.1	Wheat	cytosol	93.79	93.79
Zm00001d034326_P001	Maize	cytosol	83.45	91.67
GSMUA_Achr2P17320_001	Banana	cytosol	82.76	82.76
GSMUA_Achr7P16650_001	Banana	cytosol	54.48	82.29
GSMUA_Achr7P00900_001	Banana	cytosol	71.72	78.79
VIT_05s0049g00980.t01	Wine grape	cytosol	77.24	78.32
KRH51874	Soybean	cytosol	62.76	77.78
GSMUA_Achr2P13120_001	Banana	cytosol	77.24	77.24
VIT_07s0005g03310.t01	Wine grape	cytosol	74.48	75.52
AT2G31200.1	Thale cress	cytosol	75.86	75.34
Os12t0628100-01	Rice	extracellular	74.48	74.48
Solyc09g072590.2.1	Tomato	cytosol	74.48	74.48
KRH34385	Soybean	cytosol	75.86	74.32
KRG92420	Soybean	cytosol	75.17	73.65
KRH67374	Soybean	cytosol	73.79	73.29
KRG95660	Soybean	cytosol	73.1	72.6
Bra018268.1-P	Field mustard	mitochondrion	72.41	71.92
CDY10786	Canola	cytosol	72.41	71.92
CDY24750	Canola	cytosol	71.03	70.55
PGSC0003DMT400044218	Potato	cytosol	70.34	70.34
Solyc09g090110.2.1	Tomato	cytosol	70.34	70.34
HORVU5Hr1G100770.1	Barley	cytosol, plastid	94.48	68.5
Os05t0113400-01	Rice	cytosol, extracellular, plastid	59.31	62.32
Solyc09g072600.1.1	Tomato	cytosol	20.69	61.22
PGSC0003DMT400026656	Potato	mitochondrion	73.79	59.12
Os04t0555700-01	Rice	plasma membrane	51.72	53.96
Zm00001d034024_P001	Maize	cytosol, plastid	56.55	53.25
Os07t0484200-01	Rice	plasma membrane	51.03	53.24
Os10t0521100-01	Rice	cytosol	55.17	52.98
Os03t0243100-01	Rice	cytosol	49.66	50.35
Os03t0820600-01	Rice	cytosol, extracellular, plastid	45.52	47.48
Os03t0820500-01	Rice	plastid	40.69	39.33
Os07t0297500-00	Rice	cytosol	37.93	23.71

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	EntrezGene:4334307	ProteinID:AAK09235.1	ProteinID:ABF99174.1	InterPro:ADF-H
InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	EMBL:AK073162	ProteinID:BAF13363.1	ProteinID:BAS86671.1	ProteinID:EEE60036.1
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	EnsemblPlantsGene:Os03g0780400	EnsemblPlants:Os03t0780400-01	PFAM:PF00241
PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF26	UniProt:Q9AY76	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI00000A82C0	RefSeq:XP_015630947.1	:	:	:	:

Description

actin depolymerizing factor 2Similar to Actin-depolymerizing factor 6 (ADF-6) (AtADF6). (Os03t0780400-01)

Coordinates

chr3:-:32360719..32363837

Molecular Weight (calculated)

16794.9 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.484

Length

145 amino acids

Sequence
(BLAST)

001: MAFMRSHSNA SSGMGVAPDI RDTFLELQMK KAFRYVIFKI EEKQKQVVVE KTGATTESYD DFLASLPEND CRYALYDFDF VTGENVQKSK IFFIAWSPST
101: SRIRAKMLYS TSKDRIKQEL DGFHYEIQAT DPTEVDLEVL RERAH

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.