Factsheet for Solyc09g072600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g010750.1.1
Solyc10g086460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31200.1	Solyc09g010750.1.1	AT3G12110.1	21798944
AT2G31200.1	Solyc10g086460.1.1	AT3G12110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g072590.2.1	Tomato	cytosol	100.0	33.79
Solyc09g090110.2.1	Tomato	cytosol	75.51	25.52
AT2G31200.1	Thale cress	cytosol	73.47	24.66
Os12t0628100-01	Rice	extracellular	67.35	22.76
Bra018268.1-P	Field mustard	mitochondrion	67.35	22.6
CDY10786	Canola	cytosol	67.35	22.6
CDY24750	Canola	cytosol	67.35	22.6
TraesCS5A01G416100.1	Wheat	cytosol	61.22	20.69
Os03t0780400-01	Rice	plastid	61.22	20.69
TraesCS5D01G423800.1	Wheat	golgi	61.22	20.69
Zm00001d013141_P001	Maize	cytosol	59.18	20.0
EER90794	Sorghum	cytosol	59.18	20.0
GSMUA_Achr1P09160_001	Banana	cytosol	77.55	19.49
Solyc10g084660.1.1	Tomato	cytosol, extracellular	51.02	17.99
Solyc09g010440.2.1	Tomato	plastid	51.02	17.99
TraesCS1B01G197600.1	Wheat	cytosol	53.06	17.33
TraesCS1D01G186600.1	Wheat	cytosol	53.06	17.22
Solyc03g025750.2.1	Tomato	cytosol	46.94	16.79
Solyc06g035980.2.1	Tomato	cytosol	46.94	16.79
Zm00001d034326_P001	Maize	cytosol	44.9	16.67
Solyc10g017550.2.1	Tomato	unclear	46.94	16.55
HORVU1Hr1G048450.4	Barley	cytosol	53.06	16.46
TraesCS1A01G183100.2	Wheat	cytosol	51.02	16.13
Solyc04g011370.2.1	Tomato	extracellular	46.94	16.08
Os10t0521100-01	Rice	cytosol	48.98	15.89
Zm00001d034024_P001	Maize	cytosol, plastid	48.98	15.58
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	42.86	15.33
Solyc01g094400.2.1	Tomato	unclear	42.86	15.33
HORVU5Hr1G100770.1	Barley	cytosol, plastid	61.22	15.0
Solyc01g111380.2.1	Tomato	cytosol, plastid	40.82	13.99
KXG39048	Sorghum	plastid	48.98	12.7
Zm00001d029656_P003	Maize	cytosol	48.98	11.43
Os07t0297500-00	Rice	cytosol	42.86	9.05

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4CUT6	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF21
SUPFAM:SSF55753	EnsemblPlantsGene:Solyc09g072600.1	EnsemblPlants:Solyc09g072600.1.1	UniParc:UPI000276AF76	:	:

Description

No Description!

Coordinates

chr9:+:65189717..65190519

Molecular Weight (calculated)

5622.0 Da

IEP (calculated)

10.909

GRAVY (calculated)

-0.494

Length

49 amino acids

Sequence
(BLAST)

1: MSFKFRGPNA SSGMGVADHG KNAFLELKRK KVHRYVIFKI DEKKKEVVV

Best Arabidopsis Sequence Match ( AT2G31200.1 )
(BLAST)

001: MSFRGLSRPN AISGMGVADE SKTTFLELQR KKTHRYVVFK IDESKKEVVV EKTGNPTESY DDFLASLPDN DCRYAVYDFD FVTSENCQKS KIFFFAWSPS
101: TSGIRAKVLY STSKDQLSRE LQGIHYEIQA TDPTEVDLEV LRERAN

Arabidopsis Description

ADF6Actin-depolymerizing factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.