Factsheet for Solyc09g010440.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023061	Potato	cytosol	97.84	97.84
Solyc10g084660.1.1	Tomato	cytosol, extracellular	89.21	89.21
GSMUA_Achr6P15320_001	Banana	cytosol	77.7	81.82
Solyc04g011370.2.1	Tomato	extracellular	84.17	81.82
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	80.58	81.75
HORVU0Hr1G000200.1	Barley	cytosol	81.3	81.3
Os05t0113400-01	Rice	cytosol, extracellular, plastid	80.58	81.16
GSMUA_Achr10P...	Banana	cytosol	76.98	81.06
EES17589	Sorghum	cytosol	80.58	80.58
EER95084	Sorghum	cytosol	80.58	80.58
Solyc06g035980.2.1	Tomato	cytosol	77.7	78.83
Zm00001d035629_P001	Maize	cytosol	78.42	78.42
Zm00001d035625_P001	Maize	cytosol	73.38	77.86
Solyc03g025750.2.1	Tomato	cytosol	69.78	70.8
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	83.45	69.88
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.73	69.28
Solyc01g094400.2.1	Tomato	unclear	67.63	68.61
Solyc10g017550.2.1	Tomato	unclear	66.91	66.91
VIT_08s0040g03360.t01	Wine grape	plastid	90.65	66.67
VIT_11s0103g00260.t01	Wine grape	cytosol	55.4	65.25
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	85.61	64.32
VIT_10s0092g00330.t01	Wine grape	cytosol	41.73	63.74
Solyc09g072590.2.1	Tomato	cytosol	64.75	62.07
Solyc09g090110.2.1	Tomato	cytosol	61.15	58.62
Solyc01g111380.2.1	Tomato	cytosol, plastid	59.71	58.04
GSMUA_Achr10P...	Banana	endoplasmic reticulum	82.73	53.0
Solyc09g072600.1.1	Tomato	cytosol	17.99	51.02
GSMUA_Achr2P16220_001	Banana	cytosol	86.33	43.17

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	UniProt:K4CR71	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913
PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	EnsemblPlantsGene:Solyc09g010440.2	EnsemblPlants:Solyc09g010440.2.1	UniParc:UPI0001EE9993
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:3809998..3813024

Molecular Weight (calculated)

16009.1 Da

IEP (calculated)

7.292

GRAVY (calculated)

-0.465

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VFKIEEKQKQ VVVEKVGEPA QGYEDFTACL PDNECRYAVY DFDFVTAENC QKSRIFFIAW SPDTSRVRSK
101: MIYASTKERF KRELDGIQVE LQATDPTEMG LDVIKSRAN

Best Arabidopsis Sequence Match ( AT3G46010.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VVVEKVGQPI QTYEEFAACL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDIAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.