Factsheet for Zm00001d035629_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT5G59880.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT5G59880.1	Zm00001d053016_P002	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035625_P001	Maize	cytosol	94.24	100.0
EES17589	Sorghum	cytosol	96.4	96.4
Os05t0113400-01	Rice	cytosol, extracellular, plastid	88.49	89.13
HORVU0Hr1G000200.1	Barley	cytosol	87.77	87.77
Solyc09g010440.2.1	Tomato	plastid	78.42	78.42
CDX71067	Canola	cytosol	74.1	78.03
PGSC0003DMT400023061	Potato	cytosol	77.7	77.7
AT5G59890.1	Thale cress	cytosol	77.7	77.7
GSMUA_Achr6P15320_001	Banana	cytosol	73.38	77.27
Bra006686.1-P	Field mustard	cytosol	73.38	77.27
KRH19714	Soybean	nucleus	76.98	76.98
VIT_13s0019g00550.t01	Wine grape	cytosol	76.98	76.98
Solyc10g084660.1.1	Tomato	cytosol, extracellular	76.98	76.98
PGSC0003DMT400028567	Potato	cytosol	75.54	75.54
Bra002522.1-P	Field mustard	cytosol	75.54	75.54
CDY31586	Canola	cytosol	71.22	75.0
PGSC0003DMT400071339	Potato	cytosol	76.98	74.83
Solyc04g011370.2.1	Tomato	extracellular	76.26	74.13
PGSC0003DMT400087280	Potato	cytosol	71.22	72.79
KRH11708	Soybean	mitochondrion	72.66	72.66
KRH36708	Soybean	mitochondrion	71.94	71.94
Bra020277.1-P	Field mustard	cytosol	76.98	71.81
KRH32309	Soybean	cytosol, nucleus	74.1	71.53
AT5G59880.1	Thale cress	cytosol	71.22	71.22
AT3G46010.2	Thale cress	cytosol	76.26	70.67
Bra020276.1-P	Field mustard	cytosol	76.98	69.93
Bra006687.1-P	Field mustard	cytosol	76.98	69.93
CDX88730	Canola	cytosol	76.98	69.48
CDY09242	Canola	cytosol	76.26	69.28
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	65.47	66.42
PGSC0003DMT400008913	Potato	cytosol	65.47	66.42
Zm00001d017516_P001	Maize	cytosol	66.19	66.19
Zm00001d051388_P001	Maize	cytosol	66.19	66.19
VIT_06s0004g04280.t01	Wine grape	cytosol	79.14	65.48
CDX71068	Canola	cytosol	76.98	65.24
AT3G46000.2	Thale cress	cytosol	71.94	64.1
CDX99133	Canola	cytosol, plastid	74.82	62.28
Bra038266.1-P	Field mustard	cytosol	74.82	62.28
CDX86048	Canola	cytosol, plastid	74.1	61.68
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	82.01	61.62
Zm00001d034644_P001	Maize	plastid	58.99	58.99
Zm00001d012966_P001	Maize	plastid	57.55	57.55
VIT_08s0040g03360.t01	Wine grape	plastid	76.26	56.08
CDX88731	Canola	cytosol, plastid	78.42	54.77
AT3G45990.1	Thale cress	cytosol	51.8	54.14
VIT_10s0092g00330.t01	Wine grape	cytosol	35.25	53.85
Zm00001d034326_P001	Maize	cytosol	51.08	53.79
VIT_11s0103g00260.t01	Wine grape	cytosol	45.32	53.39
Zm00001d028392_P001	Maize	cytosol	54.68	53.15
Zm00001d013141_P001	Maize	cytosol	54.68	52.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum	79.86	51.15
Zm00001d034643_P001	Maize	cytosol	53.24	49.66
Zm00001d047942_P001	Maize	mitochondrion	54.68	44.19
CDX80216	Canola	cytosol	76.26	42.06
GSMUA_Achr2P16220_001	Banana	cytosol	82.01	41.01
Zm00001d029656_P003	Maize	cytosol	46.76	30.95
Zm00001d034024_P001	Maize	cytosol, plastid	33.81	30.52
Zm00001d002714_P003	Maize	cytosol	29.5	23.84

Protein Annotations

EntrezGene:100192897	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
ProteinID:AQK79378.1	UniProt:B6T236	EMBL:EU959051	EMBL:EU964106	GO:GO:0003674	GO:GO:0003779
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108
InterPro:IPR029006	PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI000182C09D	EnsemblPlantsGene:Zm00001d035629	EnsemblPlants:Zm00001d035629_P001	EnsemblPlants:Zm00001d035629_T001	:

Description

Actin-depolymerizing factor 4

Coordinates

chr6:-:37509032..37510146

Molecular Weight (calculated)

15856.0 Da

IEP (calculated)

8.028

GRAVY (calculated)

-0.369

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV DDDCKRRFLE LKAKRTHRFI IYRIDEKKKM VVVEQVGKPV LGYDDFAASL PANECRYAIF DYDFVTEENC QKSKIFFIAW SPDTARVRSK
101: MIYASSKERF KRELDGIQVD LQATDSAEVG LDVIQGRAS

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.