Factsheet for VIT_10s0092g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028567	Potato	cytosol	69.23	45.32
Solyc10g084660.1.1	Tomato	cytosol, extracellular	69.23	45.32
VIT_13s0019g00550.t01	Wine grape	cytosol	67.03	43.88
CDX71067	Canola	cytosol	62.64	43.18
PGSC0003DMT400023061	Potato	cytosol	64.84	42.45
Bra006686.1-P	Field mustard	cytosol	61.54	42.42
VIT_11s0103g00260.t01	Wine grape	cytosol	54.95	42.37
KRH19714	Soybean	nucleus	63.74	41.73
Solyc09g010440.2.1	Tomato	plastid	63.74	41.73
GSMUA_Achr10P...	Banana	cytosol	59.34	40.91
CDY31586	Canola	cytosol	59.34	40.91
AT5G59890.1	Thale cress	cytosol	60.44	39.57
VIT_16s0050g00220.t01	Wine grape	cytosol	57.14	39.39
KRH36708	Soybean	mitochondrion	59.34	38.85
KRH11708	Soybean	mitochondrion	59.34	38.85
Bra002522.1-P	Field mustard	cytosol	59.34	38.85
GSMUA_Achr6P15320_001	Banana	cytosol	56.04	38.64
Os05t0113400-01	Rice	cytosol, extracellular, plastid	58.24	38.41
KRH32309	Soybean	cytosol, nucleus	60.44	38.19
EER95084	Sorghum	cytosol	57.14	37.41
VIT_06s0004g04280.t01	Wine grape	cytosol	68.13	36.9
EES17589	Sorghum	cytosol	56.04	36.69
Bra020276.1-P	Field mustard	cytosol	61.54	36.6
Bra020277.1-P	Field mustard	cytosol	59.34	36.24
AT3G46010.2	Thale cress	cytosol	59.34	36.0
CDY09242	Canola	cytosol	60.44	35.95
Bra006687.1-P	Field mustard	cytosol	60.44	35.95
CDX88730	Canola	cytosol	60.44	35.71
HORVU0Hr1G000200.1	Barley	cytosol	53.85	35.25
AT5G59880.1	Thale cress	cytosol	53.85	35.25
Zm00001d035629_P001	Maize	cytosol	53.85	35.25
Zm00001d035625_P001	Maize	cytosol	49.45	34.35
VIT_05s0049g00980.t01	Wine grape	cytosol	53.85	34.27
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.54	33.73
CDX71068	Canola	cytosol	60.44	33.54
AT3G46000.2	Thale cress	cytosol	57.14	33.33
VIT_08s0040g03360.t01	Wine grape	plastid	69.23	33.33
VIT_07s0005g03310.t01	Wine grape	cytosol	50.55	32.17
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	56.04	30.72
CDX99133	Canola	cytosol, plastid	56.04	30.54
CDX86048	Canola	cytosol, plastid	56.04	30.54
Bra038266.1-P	Field mustard	cytosol	56.04	30.54
VIT_03s0038g02220.t01	Wine grape	cytosol	42.86	29.55
AT3G45990.1	Thale cress	cytosol	41.76	28.57
CDX88731	Canola	cytosol, plastid	61.54	28.14
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	57.14	28.11
GSMUA_Achr10P...	Banana	endoplasmic reticulum	56.04	23.5
CDX80216	Canola	cytosol	59.34	21.43
VIT_15s0046g03040.t01	Wine grape	cytosol	56.04	19.92
GSMUA_Achr2P16220_001	Banana	cytosol	58.24	19.06

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	ProteinID:CCB61495
ProteinID:CCB61495.1	UniProt:F6I3H7	EMBL:FN596741	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150
GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SUPFAM:SSF55753	UniParc:UPI00021088E3
ArrayExpress:VIT_10s0092g00330	EnsemblPlantsGene:VIT_10s0092g00330	EnsemblPlants:VIT_10s0092g00330.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:11855723..11856078

Molecular Weight (calculated)

10878.2 Da

IEP (calculated)

5.893

GRAVY (calculated)

-0.095

Length

91 amino acids

Sequence
(BLAST)

1: MMIVIFKIEE KQKQVVVEKV VEPVQSYEDF TISLPADECR YVVYDFDFVT KENCQKSRIF FIAWHLDTTR VKRKEICELF SVVFSRLSSK D

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.