Factsheet for VIT_08s0040g03360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol, nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g00550.t01	Wine grape	cytosol	69.31	94.24
KRH19714	Soybean	nucleus	67.2	91.37
Solyc09g010440.2.1	Tomato	plastid	66.67	90.65
Solyc10g084660.1.1	Tomato	cytosol, extracellular	66.67	90.65
PGSC0003DMT400023061	Potato	cytosol	66.14	89.93
PGSC0003DMT400028567	Potato	cytosol	65.61	89.21
KRH11708	Soybean	mitochondrion	64.55	87.77
KRH36708	Soybean	mitochondrion	64.02	87.05
CDX71067	Canola	cytosol	60.32	86.36
GSMUA_Achr10P...	Banana	cytosol	60.32	86.36
Bra006686.1-P	Field mustard	cytosol	60.32	86.36
AT5G59890.1	Thale cress	cytosol	63.49	86.33
Bra002522.1-P	Field mustard	cytosol	62.43	84.89
CDY31586	Canola	cytosol	59.26	84.85
KRH32309	Soybean	cytosol, nucleus	64.55	84.72
Os05t0113400-01	Rice	cytosol, extracellular, plastid	61.38	84.06
GSMUA_Achr6P15320_001	Banana	cytosol	58.2	83.33
EER95084	Sorghum	cytosol	60.85	82.73
AT3G46010.2	Thale cress	cytosol	64.55	81.33
Bra020277.1-P	Field mustard	cytosol	63.49	80.54
HORVU0Hr1G000200.1	Barley	cytosol	58.73	79.86
VIT_06s0004g04280.t01	Wine grape	cytosol	70.9	79.76
VIT_16s0050g00220.t01	Wine grape	cytosol	55.56	79.55
AT5G59880.1	Thale cress	cytosol	58.2	79.14
CDX88730	Canola	cytosol	64.02	78.57
Bra020276.1-P	Field mustard	cytosol	63.49	78.43
Bra006687.1-P	Field mustard	cytosol	63.49	78.43
EES17589	Sorghum	cytosol	57.67	78.42
CDY09242	Canola	cytosol	62.96	77.78
Zm00001d035625_P001	Maize	cytosol	53.44	77.1
Zm00001d035629_P001	Maize	cytosol	56.08	76.26
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	66.14	75.3
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.61	74.7
AT3G46000.2	Thale cress	cytosol	60.85	73.72
CDX71068	Canola	cytosol	63.49	73.17
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	69.84	71.35
CDX99133	Canola	cytosol, plastid	61.9	70.06
Bra038266.1-P	Field mustard	cytosol	61.9	70.06
VIT_11s0103g00260.t01	Wine grape	cytosol	43.39	69.49
CDX86048	Canola	cytosol, plastid	61.38	69.46
VIT_10s0092g00330.t01	Wine grape	cytosol	33.33	69.23
CDX88731	Canola	cytosol, plastid	68.78	65.33
VIT_05s0049g00980.t01	Wine grape	cytosol	48.68	64.34
VIT_07s0005g03310.t01	Wine grape	cytosol	48.15	63.64
AT3G45990.1	Thale cress	cytosol	42.86	60.9
VIT_03s0038g02220.t01	Wine grape	cytosol	41.8	59.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum	66.14	57.6
CDX80216	Canola	cytosol	66.67	50.0
GSMUA_Achr2P16220_001	Banana	cytosol	67.72	46.04
VIT_15s0046g03040.t01	Wine grape	cytosol	59.26	43.75

Protein Annotations

EntrezGene:100263646	wikigene:100263646	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf
InterPro:ADF/Cofilin	ProteinID:CBI32606	ProteinID:CBI32606.3	UniProt:D7TQ86	EMBL:FN596008	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
InterPro:IPR002108	InterPro:IPR029006	EntrezGene:LOC100263646	wikigene:LOC100263646	PFAM:PF00241	PFscan:PS51263
PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102	SUPFAM:SSF55753	TIGR:TC53369	TIGR:TC62169
UniParc:UPI0001BE3D40	ArrayExpress:VIT_08s0040g03360	EnsemblPlantsGene:VIT_08s0040g03360	EnsemblPlants:VIT_08s0040g03360.t01	RefSeq:XP_002273958	RefSeq:XP_002273958.1
RefSeq:XP_002273958.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:14329898..14332379

Molecular Weight (calculated)

21184.3 Da

IEP (calculated)

8.190

GRAVY (calculated)

-0.290

Length

189 amino acids

Sequence
(BLAST)

001: MSITVTILPR VAPNKKASSA ESSSSEGLSI LSTNARSSQV SVLVVDRTAK MANAASGMAV HDDCKLKFLE LKAKRTYRFI VFKIEEKQKQ VVVEKVGEPA
101: QSYEDFTASL PADECRYAVY DFDFVTEENC QKSRIFFIAW CPDSSRVRSK MIYASSKDRF KRELDGIQVE LQATDPTEMG LDVIRSRAC

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.