Factsheet for Bra002522.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034407.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	Bra034407.1-P	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31586	Canola	cytosol	94.24	99.24
Bra020277.1-P	Field mustard	cytosol	96.4	89.93
KRH19714	Soybean	nucleus	87.77	87.77
AT5G59880.1	Thale cress	cytosol	86.33	86.33
Bra006687.1-P	Field mustard	cytosol	94.96	86.27
Bra006686.1-P	Field mustard	cytosol	81.3	85.61
KRH11708	Soybean	mitochondrion	83.45	83.45
KRH36708	Soybean	mitochondrion	82.73	82.73
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	80.58	81.75
PGSC0003DMT400008913	Potato	cytosol	80.58	81.75
Os05t0113400-01	Rice	cytosol, extracellular, plastid	80.58	81.16
GSMUA_Achr10P...	Banana	cytosol	76.98	81.06
EER95084	Sorghum	cytosol	80.58	80.58
KRH32309	Soybean	cytosol, nucleus	83.45	80.56
HORVU0Hr1G000200.1	Barley	cytosol	79.14	79.14
Bra020276.1-P	Field mustard	cytosol	86.33	78.43
EES17589	Sorghum	cytosol	78.42	78.42
GSMUA_Achr6P15320_001	Banana	cytosol	73.38	77.27
Zm00001d035629_P001	Maize	cytosol	75.54	75.54
Bra010456.1-P	Field mustard	cytosol	75.54	75.54
Bra028304.1-P	Field mustard	cytosol	69.78	74.62
Bra019151.1-P	Field mustard	cytosol	69.06	74.42
Zm00001d035625_P001	Maize	cytosol	69.78	74.05
Bra029119.1-P	Field mustard	cytosol	69.06	73.85
Bra038266.1-P	Field mustard	cytosol	85.61	71.26
Bra033236.1-P	Field mustard	cytosol	70.5	70.0
Bra013901.1-P	Field mustard	cytosol	75.54	69.08
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	82.01	68.67
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	81.3	68.07
VIT_08s0040g03360.t01	Wine grape	plastid	84.89	62.43
Bra018268.1-P	Field mustard	mitochondrion	64.75	61.64
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	81.3	61.08
VIT_11s0103g00260.t01	Wine grape	cytosol	51.08	60.17
VIT_10s0092g00330.t01	Wine grape	cytosol	38.85	59.34
CDX80216	Canola	cytosol	99.28	54.76
Bra013058.1-P	Field mustard	cytosol	54.68	53.15
Bra017683.1-P	Field mustard	cytosol	50.36	51.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum	80.58	51.61
Bra011575.1-P	Field mustard	cytosol	52.52	51.41
GSMUA_Achr2P16220_001	Banana	cytosol	82.73	41.37
Bra037352.1-P	Field mustard	cytosol	67.63	33.45

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	EnsemblPlantsGene:Bra002522
EnsemblPlants:Bra002522.1	EnsemblPlants:Bra002522.1-P	GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987
GO:GO:0015629	GO:GO:0016043	GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M4CE91
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF27	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI0002543D05	:	:	:	:	:

Description

AT5G59880 (E=5e-067) ADF3 | ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding

Coordinates

chrA10:+:9064515..9065324

Molecular Weight (calculated)

15826.8 Da

IEP (calculated)

5.814

GRAVY (calculated)

-0.415

Length

139 amino acids

Sequence
(BLAST)

001: MANAASGMAV HDDCKLKFLE LKAKRTFRFI VYKIEEQQKQ VVVEKLGEPG QSHDDFAASL PADECRYAVF DFDFVTAESC QKSKIFFVAW SPDTARVRSK
101: MIYASSKDRC KRELDGIQVE LQATDPTEMD LDVFKSRAN

Best Arabidopsis Sequence Match ( AT5G59880.1 )
(BLAST)

001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN

Arabidopsis Description

ADF3Actin-depolymerizing factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.