Factsheet for GSMUA_Achr2P16220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59880.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G59880.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G59880.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G59880.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P15320_001	Banana	cytosol	42.81	90.15
Os05t0113400-01	Rice	cytosol, extracellular, plastid	44.6	89.86
GSMUA_Achr10P...	Banana	cytosol	41.73	87.88
KRH19714	Soybean	nucleus	43.88	87.77
VIT_13s0019g00550.t01	Wine grape	cytosol	43.53	87.05
Solyc09g010440.2.1	Tomato	plastid	43.17	86.33
HORVU0Hr1G000200.1	Barley	cytosol	42.45	84.89
Solyc10g084660.1.1	Tomato	cytosol, extracellular	42.45	84.89
EES17589	Sorghum	cytosol	42.09	84.17
PGSC0003DMT400023061	Potato	cytosol	42.09	84.17
GSMUA_Achr8P11370_001	Banana	cytosol	33.45	83.78
PGSC0003DMT400028567	Potato	cytosol	41.73	83.45
Bra002522.1-P	Field mustard	cytosol	41.37	82.73
CDY31586	Canola	cytosol	39.21	82.58
Zm00001d035629_P001	Maize	cytosol	41.01	82.01
KRH32309	Soybean	cytosol, nucleus	42.45	81.94
PGSC0003DMT400071339	Potato	cytosol	42.09	81.82
Zm00001d035625_P001	Maize	cytosol	38.49	81.68
AT5G59890.1	Thale cress	cytosol	40.65	81.3
KRH11708	Soybean	mitochondrion	40.65	81.3
Solyc04g011370.2.1	Tomato	extracellular	41.73	81.12
CDX71067	Canola	cytosol	38.49	81.06
Bra006686.1-P	Field mustard	cytosol	38.49	81.06
KRH36708	Soybean	mitochondrion	40.29	80.58
GSMUA_AchrUn_...	Banana	cytosol	38.13	80.3
PGSC0003DMT400087280	Potato	cytosol	39.21	80.15
GSMUA_Achr11P...	Banana	cytosol	37.77	79.55
GSMUA_Achr1P00290_001	Banana	cytosol	37.41	78.79
GSMUA_Achr11P...	Banana	cytosol	37.41	78.79
Bra020277.1-P	Field mustard	cytosol	42.09	78.52
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	46.76	78.31
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	51.8	77.84
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	46.4	77.71
Solyc06g005360.2.1	Tomato	cytosol, extracellular, nucleus	38.13	77.37
PGSC0003DMT400008913	Potato	cytosol	38.13	77.37
GSMUA_Achr4P29400_001	Banana	cytosol	26.98	76.53
Bra006687.1-P	Field mustard	cytosol	42.09	76.47
VIT_06s0004g04280.t01	Wine grape	cytosol	45.68	75.6
CDX88730	Canola	cytosol	41.73	75.32
AT5G59880.1	Thale cress	cytosol	37.41	74.82
AT3G46010.2	Thale cress	cytosol	40.29	74.67
Bra020276.1-P	Field mustard	cytosol	40.65	73.86
CDY09242	Canola	cytosol	40.29	73.2
CDX71068	Canola	cytosol	42.45	71.95
GSMUA_Achr5P24750_001	Banana	cytosol	28.42	71.17
AT3G46000.2	Thale cress	cytosol	39.93	71.15
Bra038266.1-P	Field mustard	cytosol	41.73	69.46
CDX86048	Canola	cytosol, plastid	41.73	69.46
CDX99133	Canola	cytosol, plastid	41.73	69.46
GSMUA_Achr7P00900_001	Banana	cytosol	32.73	68.94
VIT_08s0040g03360.t01	Wine grape	plastid	46.04	67.72
GSMUA_Achr10P...	Banana	endoplasmic reticulum	52.16	66.82
GSMUA_Achr2P13120_001	Banana	cytosol	34.53	66.21
GSMUA_Achr7P16650_001	Banana	cytosol	22.66	65.62
GSMUA_Achr6P15330_001	Banana	cytosol, plastid	21.22	65.56
GSMUA_Achr2P17320_001	Banana	cytosol	33.81	64.83
VIT_11s0103g00260.t01	Wine grape	cytosol	26.98	63.56
CDX88731	Canola	cytosol, plastid	43.17	60.3
GSMUA_Achr5P12270_001	Banana	plastid, vacuole	43.53	60.2
GSMUA_Achr11P...	Banana	cytosol, plastid	30.22	58.74
VIT_10s0092g00330.t01	Wine grape	cytosol	19.06	58.24
AT3G45990.1	Thale cress	cytosol	27.7	57.89
GSMUA_Achr5P18890_001	Banana	cytosol, plastid	29.5	57.34
CDX80216	Canola	cytosol	47.84	52.78
GSMUA_Achr2P18590_001	Banana	cytosol	42.45	51.98
GSMUA_Achr2P11510_001	Banana	cytosol	42.09	51.32
GSMUA_Achr1P09160_001	Banana	cytosol	35.61	50.77
GSMUA_Achr11P...	Banana	cytosol	29.86	49.11
GSMUA_AchrUn_...	Banana	extracellular	12.23	39.08

Protein Annotations

MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin	GO:GO:0003674
GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043	GO:GO:0030042
EnsemblPlantsGene:GSMUA_Achr2G16220_001	EnsemblPlants:GSMUA_Achr2P16220_001	EnsemblPlants:GSMUA_Achr2T16220_001	InterPro:IPR002108	InterPro:IPR029006	UniProt:M0S8G3
PFAM:PF00241	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF30	SMART:SM00102	SUPFAM:SSF55753
UniParc:UPI0002956360	SEG:seg	:	:	:	:

Description

Actin-depolymerizing factor 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G16220_001]

Coordinates

chr2:+:17210633..17215207

Molecular Weight (calculated)

31651.1 Da

IEP (calculated)

9.165

GRAVY (calculated)

-0.246

Length

278 amino acids

Sequence
(BLAST)

001: MGLKIYLTDH TERIVSFVIK FVPTFATLSG FTRCLPDCLF VSTNFRVRGL CASFGDRDRW RESPRKTTCC GVRSPPPQYF FPTAPAICFP NSLPSPSRPL
101: RLRSRSLPFL VQVLSRSPRF PPEAQSVPTL SHFFCQSPEM ANAASGMAVN DDCKLKFLEL KAKRTYRFIV FKIDEKLKQV VVEKVGEPTL GYDDFSASLP
201: TNECRYAVFD FDFVTEENCQ KSKIFFIAWS PDTSRVRSKM LYASSKDRFK RELDGIQVEL QATDPTEMGL DVIRGRAN

Best Arabidopsis Sequence Match ( AT5G59890.1 )
(BLAST)

001: MANAASGMAV HDDCKLRFLE LKAKRTHRFI VYKIEEKQKQ VIVEKVGEPI LTYEDFAASL PADECRYAIY DFDFVTAENC QKSKIFFIAW CPDVAKVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVLKSRVN

Arabidopsis Description

ADF4Actin-depolymerizing factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSK3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.