Factsheet for PGSC0003DMT400087280

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071339	Potato	cytosol	99.26	94.41
Solyc04g011370.2.1	Tomato	extracellular	98.53	93.71
GSMUA_Achr10P...	Banana	cytosol	83.82	86.36
PGSC0003DMT400028567	Potato	cytosol	83.09	81.3
GSMUA_Achr6P15320_001	Banana	cytosol	78.68	81.06
PGSC0003DMT400023061	Potato	cytosol	81.62	79.86
Os05t0113400-01	Rice	cytosol, extracellular, plastid	79.41	78.26
PGSC0003DMT400008913	Potato	cytosol	77.94	77.37
EER95084	Sorghum	cytosol	78.68	76.98
HORVU0Hr1G000200.1	Barley	cytosol	75.74	74.1
EES17589	Sorghum	cytosol	75.0	73.38
PGSC0003DMT400076911	Potato	cytosol	73.53	72.46
Zm00001d035629_P001	Maize	cytosol	72.79	71.22
Zm00001d035625_P001	Maize	cytosol	66.91	69.47
PGSC0003DMT400037205	Potato	cytosol	69.12	68.61
GSMUA_Achr6P33310_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.35	67.47
GSMUA_Achr9P04050_001	Banana	endoplasmic reticulum, extracellular	80.88	66.27
PGSC0003DMT400000464	Potato	cytosol	66.18	65.69
PGSC0003DMT400026582	Potato	mitochondrion	66.18	64.75
GSMUA_Achr10P...	Banana	endoplasmic reticulum, vacuole	80.15	58.92
PGSC0003DMT400015865	Potato	cytosol	55.15	52.45
PGSC0003DMT400044218	Potato	cytosol	55.88	52.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum	79.41	49.77
PGSC0003DMT400026656	Potato	mitochondrion	61.03	45.86
GSMUA_Achr2P16220_001	Banana	cytosol	80.15	39.21

Protein Annotations

EntrezGene:102594782	MapMan:20.2.2.8	Gene3D:3.40.20.10	InterPro:ADF-H	InterPro:ADF-H/Gelsolin-like_dom_sf	InterPro:ADF/Cofilin
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0008150	GO:GO:0009987	GO:GO:0015629	GO:GO:0016043
GO:GO:0030042	InterPro:IPR002108	InterPro:IPR029006	UniProt:M1DDI0	PFAM:PF00241	EnsemblPlantsGene:PGSC0003DMG400036851
PGSC:PGSC0003DMG400036851	EnsemblPlants:PGSC0003DMT400087280	PFscan:PS51263	PANTHER:PTHR11913	PANTHER:PTHR11913:SF50	SMART:SM00102
SUPFAM:SSF55753	UniParc:UPI0002968EC1	RefSeq:XP_006367965.1	:	:	:

Description

Actin-depolymerizing factor 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400036851]

Coordinates

chr00:+:33717987..33718489

Molecular Weight (calculated)

15851.9 Da

IEP (calculated)

5.351

GRAVY (calculated)

-0.528

Length

136 amino acids

Sequence
(BLAST)

001: MAVHDDCKLK FLELKAKRTY RFIIYKIEEK QKQVVVEKLG EPTESHEDFA AGLPADECRY AVYDFDFMTE ENCQKSRIFF IAWSPDTARV RSKMIYASSK
101: DRFKRELDGF QVELQATDPT EMGLDVFRSR AGGIEC

Best Arabidopsis Sequence Match ( AT3G46010.2 )
(BLAST)

001: MVSSIFHLLS RSANAASGMA VHDDCKLRFL ELKAKRTHRF IVYKIEEKQK QVVVEKVGQP IQTYEEFAAC LPADECRYAI YDFDFVTAEN CQKSKIFFIA
101: WCPDIAKVRS KMIYASSKDR FKRELDGIQV ELQATDPTEM DLDVFRSRAN

Arabidopsis Description

ADF1Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.